Browse Element(s) Details


OsAffx.11969.1.S1_at

Description tigr:9630.m00934
TID=OsAffx.11969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1017011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10130Os.17046.1.S1_at11/112+5297665..5306435tubulin-specific chaperone C, putative, expressed
LOC_Os02g10140OsAffx.24182.1.S1_at11/112+5315119..5318064Transcription factor HBP-1b, putative, expressed
LOC_Os02g10150OsAffx.2562.1.S1_at11/112+5321781..5322421hypothetical protein
LOC_Os02g10160Os.25152.1.S1_at11/112+5324567..5328285expressed protein
LOC_Os02g10170OsAffx.11969.1.S1_at11/112+5329016..5330521expressed protein
LOC_Os02g10180Os.38811.1.S1_a_at11/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180OsAffx.16132.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180Os.25087.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10190Os.5227.1.S1_at11/112+5339189..5344517secreted protein, putative, expressed
LOC_Os02g10200Os.12188.1.S1_at11/112+5345611..5347486AN1-like Zinc finger family protein, expressed
LOC_Os02g10210OsAffx.18697.2.S1_at11/112+5348720..5350221expressed protein
LOC_Os02g10210Os.45990.2.S1_x_at8/112+5348720..5350221expressed protein
LOC_Os02g10220Os.6105.1.S1_at11/112+5351367..5355145Chaperone protein dnaJ 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11969.1.S1_at--540--591Chr02:5329191..5329215 (25 bp)
ATGCCAGCGAGTTGAGCGTGGACGT
LOC_Os02g10170
OsAffx.11969.1.S1_at--142--3871Chr02:5329250..5329274 (25 bp)
CTGATGAGTGCCACGACGGCGATGT
LOC_Os02g10170
OsAffx.11969.1.S1_at--126--7511Chr02:5329273..5329297 (25 bp)
GTGGTCGAGCAGATTGCCACCGCCG
LOC_Os02g10170
OsAffx.11969.1.S1_at--934--5932Chr02:5329279..5329303 (25 bp)
GAGCAGATTGCCACCGCCGCTAGAT
LOC_Os02g10170
OsAffx.11969.1.S1_at--1082--1791Chr02:5329354..5329378 (25 bp)
ACCGCTGGATCTGGCGCGAGAGGGA
LOC_Os02g10170
OsAffx.11969.1.S1_at--861--1071Chr02:5329394..5329418 (25 bp)
AGGGCCGCTGGCTCCACGCCAGTAG
LOC_Os02g10170
OsAffx.11969.1.S1_at--1146--4771Chr02:5329404..5329428 (25 bp)
GCTCCACGCCAGTAGGGAGAGCGCC
LOC_Os02g10170
OsAffx.11969.1.S1_at--521--5431Chr02:5329538..5329562 (25 bp)
GAACCGATAGGAGCGGTGGATCCCC
LOC_Os02g10170
OsAffx.11969.1.S1_at--418--971Chr02:5329612..5329636 (25 bp)
AGGAGCGGTGGATCCTCTCCCCGTC
LOC_Os02g10170
OsAffx.11969.1.S1_at--333--4291Chr02:5329625..5329649 (25 bp)
CCTCTCCCCGTCGTTGTGGAGGAAG
LOC_Os02g10170
OsAffx.11969.1.S1_at--586--8171Chr02:5329669..5329693 (25 bp)
GGAACCGGCAGGGTGCCTTCCCTGT
LOC_Os02g10170
Target Sequence 
ATGCCAGCGAGTTGAGCGTGGACGTGAGGCGCGCCTCGGACATGGCCACCGCGGAGGTGCTGATGAGTGCCACGACGGCG
ATGTGGTCGAGCAGATTGCCACCGCCGCTAGATCTGCCGTGGGAGGGAGGCGAGAGGGGGCGGAGGGAGCCACCGACGCC
GCCACCGCTGGATCTGGCGCGAGAGGGAGGCGAGAAGGGGCGGAGGGCCGCTGGCTCCACGCCAGTAGGGAGAGCGCCGC
CAGTGGAGCAGGTGGAGGAAGGGGGGAGGGAGTGGCCGAGGCGGTGGTTCCCCTCCCCGTCGCTGATCCCCGTCGTCGTG
GAGGAAGGGAGAGGGGGTGACCGAGAGGAACCGATAGGAGCGGTGGATCCCCTTCCCATCGCCGTGGAGGAAGGGGGAGA
GAGTGACCGAGGGGAACCGGCAGGAGCGGTGGATCCTCTCCCCGTCGTTGTGGAGGAAGGGGGATGGAGTGGCCGAGGGG
AACCGGCAGGGTGCCTTCCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis