Browse Element(s) Details


OsAffx.18697.2.S1_at

Description tigr:9630.m00939
TID=OsAffx.18697.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1021011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10160Os.25152.1.S1_at11/112+5324567..5328285expressed protein
LOC_Os02g10170OsAffx.11969.1.S1_at11/112+5329016..5330521expressed protein
LOC_Os02g10180Os.38811.1.S1_a_at11/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180OsAffx.16132.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180Os.25087.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10190Os.5227.1.S1_at11/112+5339189..5344517secreted protein, putative, expressed
LOC_Os02g10200Os.12188.1.S1_at11/112+5345611..5347486AN1-like Zinc finger family protein, expressed
LOC_Os02g10210OsAffx.18697.2.S1_at11/112+5348720..5350221expressed protein
LOC_Os02g10210Os.45990.2.S1_x_at8/112+5348720..5350221expressed protein
LOC_Os02g10220Os.6105.1.S1_at11/112+5351367..5355145Chaperone protein dnaJ 6, putative, expressed
LOC_Os02g10230Os.18721.1.S1_at11/112+5357310..5361629ZIP Zinc transporter family protein, expressed
LOC_Os02g10240Os.55753.1.S1_at11/112+5364450..5366226expressed protein
LOC_Os02g10240Os.55753.1.S1_x_at11/112+5364450..5366226expressed protein
LOC_Os02g10240OsAffx.29835.1.S1_x_at1/112+5364450..5366226expressed protein
LOC_Os02g10250OsAffx.11971.1.S1_at11/112+5369277..5369552hypothetical protein
LOC_Os02g10260Os.27720.1.S1_at10/112+5373128..5380134outer membrane protein, OMP85 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18697.2.S1_at--480--9591Chr02:5349776..5349800 (25 bp)
TCATCAAAACGTTAGATACCCGGGT
LOC_Os02g10210
OsAffx.18697.2.S1_at--745--6471Chr02:5349790..5349814 (25 bp)
GATACCCGGGTGAACTAATATATGT
LOC_Os02g10210
OsAffx.18697.2.S1_at--1046--6091Chr02:5349821..5349845 (25 bp)
GAGTCATTTCAGCATACTCCTGTGA
LOC_Os02g10210
OsAffx.18697.2.S1_at--1110--4951Chr02:5349832..5349856 (25 bp)
GCATACTCCTGTGAGAAGCAGCAAA
LOC_Os02g10210
OsAffx.18697.2.S1_at--221--10191Chr02:5349908..5349932 (25 bp)
TATAGAACCTGAAATATGCACCATT
LOC_Os02g10210
OsAffx.18697.2.S1_at--33--271Chr02:5349921..5349945 (25 bp)
ATATGCACCATTTATTCCATTCTAT
LOC_Os02g10210
OsAffx.18697.2.S1_at--864--7331Chr02:5349961..5349985 (25 bp)
GTGTAAACGGTATCAGAGCTCGAAA
LOC_Os02g10210
OsAffx.18697.2.S1_at--522--9211Chr02:5349980..5350004 (25 bp)
TCGAAAATTTTCACGCATAGGGCTA
LOC_Os02g10210
OsAffx.18697.2.S1_at--499--3011Chr02:5350009..5350033 (25 bp)
AATGAAGAGCTATTTTTTCACGAAT
LOC_Os02g10210
OsAffx.18697.2.S1_at--946--5211Chr02:5350064..5350088 (25 bp)
GAATTACGGAGCGATTTCAGCCTAA
LOC_Os02g10210
OsAffx.18697.2.S1_at--601--9931Chr02:5350150..5350174 (25 bp)
TACGGAGCTAGGTATAGGGTTTCAA
LOC_Os02g10210
Target Sequence 
TCATCAAAACGTTAGATACCCGGGTGAACTAATATATGTTGGTATGAGTCATTTCAGCATACTCCTGTGAGAAGCAGCAA
ATGGACAATTACATGTATGAGAGTATCTGATAAATTTTATGATCCTTGCATATATAGAACCTGAAATATGCACCATTTAT
TCCATTCTATTTTGCAAAGAAGAATGTGTAAACGGTATCAGAGCTCGAAAATTTTCACGCATAGGGCTAAACTAATGAAG
AGCTATTTTTTCACGAATAATATAGCATTTTTTTAAAAAATATAATAAGAATTACGGAGCGATTTCAGCCTAAACAAATA
AGAGCTATTTTTTTCACAAATTATATAGCATTTTTTTAAAAATATAATAAGGATTACGGAGCTAGGTATAGGGTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18697.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis