Browse Element(s) Details


Os.18721.1.S1_at

Description gb:AK068640.1
DB_XREF= gi:32978657
TID=Os.18721.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157C18, full insert sequence.
FL= gb:AK068640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1023011/11ZIP Zinc transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10180Os.38811.1.S1_a_at11/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180OsAffx.16132.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180Os.25087.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10190Os.5227.1.S1_at11/112+5339189..5344517secreted protein, putative, expressed
LOC_Os02g10200Os.12188.1.S1_at11/112+5345611..5347486AN1-like Zinc finger family protein, expressed
LOC_Os02g10210OsAffx.18697.2.S1_at11/112+5348720..5350221expressed protein
LOC_Os02g10210Os.45990.2.S1_x_at8/112+5348720..5350221expressed protein
LOC_Os02g10220Os.6105.1.S1_at11/112+5351367..5355145Chaperone protein dnaJ 6, putative, expressed
LOC_Os02g10230Os.18721.1.S1_at11/112+5357310..5361629ZIP Zinc transporter family protein, expressed
LOC_Os02g10240Os.55753.1.S1_at11/112+5364450..5366226expressed protein
LOC_Os02g10240Os.55753.1.S1_x_at11/112+5364450..5366226expressed protein
LOC_Os02g10240OsAffx.29835.1.S1_x_at1/112+5364450..5366226expressed protein
LOC_Os02g10250OsAffx.11971.1.S1_at11/112+5369277..5369552hypothetical protein
LOC_Os02g10260Os.27720.1.S1_at10/112+5373128..5380134outer membrane protein, OMP85 family protein, expressed
LOC_Os02g10270OsAffx.32166.1218.S1_x_at6/112+5384499..5392658retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0016020cellular_componentmembrane
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18721.1.S1_at--445--9631Chr02:5360829..5361192 (25 bp)
TCATGTCTGCAAGCTTGTATTTCTT
LOC_Os02g10230
Os.18721.1.S1_at--1125--5891Chr02:5361217..5361241 (25 bp)
GAGCTTGTAGCACATGACTATCCAT
LOC_Os02g10230
Os.18721.1.S1_at--53--10811Chr02:5361248..5361272 (25 bp)
TTGTCACACTATCCTCTGAACTGAA
LOC_Os02g10230
Os.18721.1.S1_at--110--6291Chr02:5361290..5361314 (25 bp)
GATGTTAACTTTCTGAGCACTGCCA
LOC_Os02g10230
Os.18721.1.S1_at--549--10111Chr02:5361333..5361357 (25 bp)
TATGGTTCGCCATTTATCAAACGGA
LOC_Os02g10230
Os.18721.1.S1_at--839--6511Chr02:5361364..5361388 (25 bp)
GATTTGTGACTTAGATTCGCGCGTT
LOC_Os02g10230
Os.18721.1.S1_at--917--9331Chr02:5361380..5361404 (25 bp)
TCGCGCGTTGGCCATGTGTATGCTA
LOC_Os02g10230
Os.18721.1.S1_at--676--7431Chr02:5361395..5361419 (25 bp)
GTGTATGCTATCACAGCTGGTCATT
LOC_Os02g10230
Os.18721.1.S1_at--227--5251Chr02:5361480..5361504 (25 bp)
GAATCAGAATGTAACCTCCGCTTGT
LOC_Os02g10230
Os.18721.1.S1_at--1091--8131Chr02:5361517..5361541 (25 bp)
GGACACAACTTGAACTAGCAGACTG
LOC_Os02g10230
Os.18721.1.S1_at--52--6451Chr02:5361546..5361570 (25 bp)
GATCAGTCCTTTAACTTGACCAGTG
LOC_Os02g10230
Target Sequence 
TCATGTCTGCAAGCTTGTATTTCTTGGAGATCAGCCTGCCAAAGGAAGTGAGCTTGTAGCACATGACTATCCATACAAGC
TTGTCACACTATCCTCTGAACTGAAGCGGAGAACTTAGGAGAGATGTTAACTTTCTGAGCACTGCCAGGCAGGGATGTGG
GGATATATGGTTCGCCATTTATCAAACGGAAACAAGGATTTGTGACTTAGATTCGCGCGTTGGCCATGTGTATGCTATCA
CAGCTGGTCATTGTATTTGACCATTTTACAGTGAAGATGAACAGTCTGGGATGGGTGGCAAAACACCACCCAGAATCAGA
ATGTAACCTCCGCTTGTTGGGGAGGAATAGGACACAACTTGAACTAGCAGACTGATCAGATCAGTCCTTTAACTTGACCA
GTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis