Browse Element(s) Details


Os.55753.1.S1_x_at

Description gb:AK108729.1
DB_XREF= gi:32993938
TID=Os.55753.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D01, full insert sequence.
FL= gb:AK108729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1024011/11expressed protein
LOC_Os06g304091/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10190Os.5227.1.S1_at11/112+5339189..5344517secreted protein, putative, expressed
LOC_Os02g10200Os.12188.1.S1_at11/112+5345611..5347486AN1-like Zinc finger family protein, expressed
LOC_Os02g10210OsAffx.18697.2.S1_at11/112+5348720..5350221expressed protein
LOC_Os02g10210Os.45990.2.S1_x_at8/112+5348720..5350221expressed protein
LOC_Os02g10220Os.6105.1.S1_at11/112+5351367..5355145Chaperone protein dnaJ 6, putative, expressed
LOC_Os02g10230Os.18721.1.S1_at11/112+5357310..5361629ZIP Zinc transporter family protein, expressed
LOC_Os02g10240Os.55753.1.S1_at11/112+5364450..5366226expressed protein
LOC_Os02g10240Os.55753.1.S1_x_at11/112+5364450..5366226expressed protein
LOC_Os02g10240OsAffx.29835.1.S1_x_at1/112+5364450..5366226expressed protein
LOC_Os02g10250OsAffx.11971.1.S1_at11/112+5369277..5369552hypothetical protein
LOC_Os02g10260Os.27720.1.S1_at10/112+5373128..5380134outer membrane protein, OMP85 family protein, expressed
LOC_Os02g10270OsAffx.32166.1218.S1_x_at6/112+5384499..5392658retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55753.1.S1_x_at--952--7531Chr02:5365019..5365043 (25 bp)
GGGCACGGGTCGCAGTACCGGCGAG
LOC_Os02g10240
Os.55753.1.S1_x_at--230--5971Chr02:5364770..5364794 (25 bp)
GAGAAGAACTGCGGCCGCCTCTGGC
LOC_Os02g10240
Os.55753.1.S1_x_at--60--4171Chr02:5364615..5364639 (25 bp)
CGCCGGTGTGCTGCGATGACCTTAA
LOC_Os02g10240
Os.55753.1.S1_x_at--410--7471Chr02:5364610..5364634 (25 bp)
GTGTGCTGCGATGACCTTAATTTAT
LOC_Os02g10240
Os.55753.1.S1_x_at--750--4771Chr02:5364606..5364630 (25 bp)
GCTGCGATGACCTTAATTTATATAT
LOC_Os02g10240
Os.55753.1.S1_x_at--978--7371Chr02:5364579..5364603 (25 bp)
GTGAGTGCGAAATTAATTAGCTGAT
LOC_Os02g10240
Os.55753.1.S1_x_at--1143--3131Chr02:5364565..5364589 (25 bp)
AATTAGCTGATTATTGGTTAGTTTC
LOC_Os02g10240
Os.55753.1.S1_x_at--293--6551Chr02:5364557..5364581 (25 bp)
GATTATTGGTTAGTTTCAGGTTATT
LOC_Os02g10240
Os.55753.1.S1_x_at--199--3152Chr06:17566712..17566816 (24 bp)
AATTAATTTGTTTGTGATCGATCAT
LOC_Os06g30409
Os.55753.1.S1_x_at--936--3571Chr02:5364498..5364522 (25 bp)
CATATATATATGTGGAGGACTCTCT
LOC_Os02g10240
Os.55753.1.S1_x_at--1072--8551Chr02:5364486..5364510 (25 bp)
TGGAGGACTCTCTTAATTGTTTTTT
LOC_Os02g10240
Target Sequence 
GGGCACGGGTCGCAGTACCGGCGAGGCGGGACGGCGGCGCTGCGCGGGGCGCAGCCGACGGCGATGCTCCGGCTGCCGTG
CTACTGCTGCGCGGCGGGGTGCCGCAACCACATCGACCACCCGCGGGCGCGGCCGCTCAAGGACTTCCGCACCCTGCAGA
CGCACTACCGCCGCCGCCACGGCGCCCGCGACTTCGCCTGCCGCCGCTGCGCCAAGCGCTTCGCCGTCCGCGGCGACTGG
CGCACCCACGAGAAGAACTGCGGCCGCCTCTGGCGCTGCGCCTGCGGCGCCCACTTCCGACACAAGCGCTCCCTCAACGA
CCACGCACGGGCCTTCGGCGCCGCCCACGCCCACGCCGGCGCCGGCGCCGGCGCCGAAGACGACGGCCGCGCCGCCGCCG
CCGCCGCCGGTGTGCTGCGATGACCTTAATTTATATATATGTGAGTGCGAAATTAATTAGCTGATTATTGGTTAGTTTCA
GGTTATTTTTTTAGTAGAAAATTAATTTGTTTGTGATCGATCATATATATATGTGGAGGACTCTCTTAATTGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55753.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis