Browse Element(s) Details


Os.27720.1.S1_at

Description gb:AK066028.1
DB_XREF= gi:32976046
TID=Os.27720.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27720 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047H11, full insert sequence.
FL= gb:AK066028.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1026010/11outer membrane protein, OMP85 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10210OsAffx.18697.2.S1_at11/112+5348720..5350221expressed protein
LOC_Os02g10210Os.45990.2.S1_x_at8/112+5348720..5350221expressed protein
LOC_Os02g10220Os.6105.1.S1_at11/112+5351367..5355145Chaperone protein dnaJ 6, putative, expressed
LOC_Os02g10230Os.18721.1.S1_at11/112+5357310..5361629ZIP Zinc transporter family protein, expressed
LOC_Os02g10240Os.55753.1.S1_at11/112+5364450..5366226expressed protein
LOC_Os02g10240Os.55753.1.S1_x_at11/112+5364450..5366226expressed protein
LOC_Os02g10240OsAffx.29835.1.S1_x_at1/112+5364450..5366226expressed protein
LOC_Os02g10250OsAffx.11971.1.S1_at11/112+5369277..5369552hypothetical protein
LOC_Os02g10260Os.27720.1.S1_at10/112+5373128..5380134outer membrane protein, OMP85 family protein, expressed
LOC_Os02g10270OsAffx.32166.1218.S1_x_at6/112+5384499..5392658retrotransposon protein, putative, unclassified
LOC_Os02g10280OsAffx.27496.1.S1_x_at1/112+5396243..5399038hAT family dimerisation domain containing protein
LOC_Os02g10290Os.27124.1.S1_at10/112+5404703..5410735Copper-transporting ATPase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009707cellular_componentchloroplast outer membrane
GO:0009941cellular_componentchloroplast envelope
GO:0010006cellular_componentToc complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27720.1.S1_at--403--6931Chr02:5373920..5373944 (25 bp)
GTAGTGATCTTAGTTCTGGTCCCAA
LOC_Os02g10260
Os.27720.1.S1_at--902--10531Chr02:5373910..5373931 (22 bp)
TTCTGGTCCCAAAGTTCCTGGTGAC
LOC_Os02g10260
Os.27720.1.S1_at--132--5851Chr02:5373501..5373525 (25 bp)
GACCTTTGCGTCTTGAGTATGCTTT
LOC_Os02g10260
Os.27720.1.S1_at--381--3431Chr02:5373423..5373447 (25 bp)
CAGAGTATCATTGTGTTTGTCGGCG
LOC_Os02g10260
Os.27720.1.S1_at--468--7191Chr02:5373405..5373429 (25 bp)
GTCGGCGTGATCCTTCATTTGATTA
LOC_Os02g10260
Os.27720.1.S1_at--439--9891Chr02:5373356..5373380 (25 bp)
TACTTCCATTTCTTTGCGGTATCAA
LOC_Os02g10260
Os.27720.1.S1_at--1097--2711Chr02:5373312..5373336 (25 bp)
AAGCAAATTTTGTCTGTCCCAATTC
LOC_Os02g10260
Os.27720.1.S1_at--69--7151Chr02:5373301..5373325 (25 bp)
GTCTGTCCCAATTCCCTTATTGTAA
LOC_Os02g10260
Os.27720.1.S1_at--185--9271Chr02:5373254..5373278 (25 bp)
TCCTCCCTCTTCTCATGTAGATGTT
LOC_Os02g10260
Os.27720.1.S1_at--989--6371Chr02:5373209..5373233 (25 bp)
GATCCCACCAGGTAATTACTCATGA
LOC_Os02g10260
Os.27720.1.S1_at--796--3051Chr02:5373070..5373094 (25 bp)
AATCTGAGCCTCTGCTATTCAGCTT
NONE
Target Sequence 
GTAGTGATCTTAGTTCTGGTCCCAAAGTTCCTGGTGACCCAGCCGGAGCTCGTGGGAAGCCAGGAAGTGGTTACGGTTAC
GGTGTTGGCGTCCGTGTGGACTCCCCACTGGGACCTTTGCGTCTTGAGTATGCTTTCAATGATAAACAAGCAAGGCGATT
TCATTTTGGGGTTGGCTACAGAAATTAACCAGAGTATCATTGTGTTTGTCGGCGTGATCCTTCATTTGATTAGCTGCTGT
TAGGAGATAGTACCATTACTTCCATTTCTTTGCGGTATCAATATGTGAAAGCCTTTTGCAAAGCAAATTTTGTCTGTCCC
AATTCCCTTATTGTAACATATTTGTACATTTTTTTCAATCCTCCCTCTTCTCATGTAGATGTTCTTGAAACTGAGGAGAA
AATGATCCCACCAGGTAATTACTCATGACTTATGGTTGGGTGAAGTTCCCTGGGATAATTTAAACAAGTTTTGTCGTTGT
CGTAGGACAAAATTTTGGATTTGTATCAATGTCACCATTTGTATTGTAATGTTAGCTGGAGAAATCTGAGCCTCTGCTAT
TCAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis