Browse Element(s) Details


Os.27124.1.S1_at

Description gb:AK100988.1
DB_XREF= gi:32986197
TID=Os.27124.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023145H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023145H17, full insert sequence.
FL= gb:AK100988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1029010/11Copper-transporting ATPase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10260Os.27720.1.S1_at10/112+5373128..5380134outer membrane protein, OMP85 family protein, expressed
LOC_Os02g10270OsAffx.32166.1218.S1_x_at6/112+5384499..5392658retrotransposon protein, putative, unclassified
LOC_Os02g10280OsAffx.27496.1.S1_x_at1/112+5396243..5399038hAT family dimerisation domain containing protein
LOC_Os02g10290Os.27124.1.S1_at10/112+5404703..5410735Copper-transporting ATPase 3, putative, expressed
LOC_Os02g10300Os.10004.1.S1_s_at11/112+5411327..5414290Exopolygalacturonase precursor, putative, expressed
LOC_Os02g10310Os.8160.1.S1_at11/112+5414917..5418652Fumarylacetoacetase, putative, expressed
LOC_Os02g10320Os.51818.1.S1_at10/112+5422137..54249243-oxoacyl-synthase, mitochondrial precursor, putative, expressed
LOC_Os02g10330NANA2+5428867..5431872hypothetical protein
LOC_Os02g10340OsAffx.20387.1.S1_x_at1/112+5432508..5438758retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0009767biological_processphotosynthetic electron transport
GO:0009873biological_processethylene mediated signaling pathway
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009941cellular_componentchloroplast envelope
GO:0005375molecular_functioncopper ion transporter activity
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27124.1.S1_at--406--2731Chr02:5410164..5410188 (25 bp)
AAGAATCCGGCTCAACTACGTCTGG
LOC_Os02g10290
Os.27124.1.S1_at--129--9711Chr02:5410175..5410199 (25 bp)
TCAACTACGTCTGGGCTCTGGGCTA
LOC_Os02g10290
Os.27124.1.S1_at--100--9471Chr02:5410191..5410215 (25 bp)
TCTGGGCTACAACGTCCTGGGCATG
LOC_Os02g10290
Os.27124.1.S1_at--1056--9091Chr02:5410325..5410349 (25 bp)
TGCTCCAGCTCTACAAGAAGCCATT
LOC_Os02g10290
Os.27124.1.S1_at--80--1451Chr02:5410340..5410364 (25 bp)
AGAAGCCATTGCACGTCGAGGAGGT
LOC_Os02g10290
Os.27124.1.S1_at--1012--1051Chr02:5410361..5410385 (25 bp)
AGGTGGCTGCTGGACCCAAGAATGA
LOC_Os02g10290
Os.27124.1.S1_at--408--1971Chr02:5410404..5410428 (25 bp)
ACTGAAGAAGCGTCGGTCTTGCTGT
LOC_Os02g10290
Os.27124.1.S1_at--157--9591Chr02:5410420..5410444 (25 bp)
TCTTGCTGTGCTGACTGAAACTGAG
LOC_Os02g10290
Os.27124.1.S1_at--600--2371Chr02:5410453..5410477 (25 bp)
AAACGCCTTGTTTGCAGTGGCCCTC
LOC_Os02g10290
Os.27124.1.S1_at--648--8411Chr02:5410471..5410495 (25 bp)
GGCCCTCCTGACTGATTTCTGTACA
LOC_Os02g10290
Os.27124.1.S1_at--78--7591NONE
GGGCTTAATTGCTATCCAGTGATAT
NONE
Target Sequence 
AAGAATCCGGCTCAACTACGTCTGGGCTCTGGGCTACAACGTCCTGGGCATGCCGGTCGCCGCGGGCGTCCTGTTCCCGT
TCACCGGCATCCGGCTGCCGCCATGGCTCGCCGGAGCTTGCATGGCGGCCTCGTCGGTGAGCGTCGTCTGCTCGTCGCTG
CTGCTCCAGCTCTACAAGAAGCCATTGCACGTCGAGGAGGTGGCTGCTGGACCCAAGAATGACCCGGATTTGGTGTGAAG
ACTGAAGAAGCGTCGGTCTTGCTGTGCTGACTGAAACTGAGCATGAAGCAAACGCCTTGTTTGCAGTGGCCCTCCTGACT
GATTTCTGTACAGTAGTCATGTTTTGGGATTNTCTGTTTTTTTTTGGGTACTTCTGATTGATTCAATAATAATTTGGGGG
GCTTAATTGCTATCCAGTGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis