Browse Element(s) Details


Os.10004.1.S1_s_at

Description gb:CA765557
DB_XREF= gi:27547385
DB_XREF=AF53-Rpf_07_P11_T7_048.ab1
CLONE=C0002675
TID=Os.10004.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10004 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_181917.1 (A.thaliana) putative polygalacturonase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1030011/11Exopolygalacturonase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10270OsAffx.32166.1218.S1_x_at6/112+5384499..5392658retrotransposon protein, putative, unclassified
LOC_Os02g10280OsAffx.27496.1.S1_x_at1/112+5396243..5399038hAT family dimerisation domain containing protein
LOC_Os02g10290Os.27124.1.S1_at10/112+5404703..5410735Copper-transporting ATPase 3, putative, expressed
LOC_Os02g10300Os.10004.1.S1_s_at11/112+5411327..5414290Exopolygalacturonase precursor, putative, expressed
LOC_Os02g10310Os.8160.1.S1_at11/112+5414917..5418652Fumarylacetoacetase, putative, expressed
LOC_Os02g10320Os.51818.1.S1_at10/112+5422137..54249243-oxoacyl-synthase, mitochondrial precursor, putative, expressed
LOC_Os02g10330NANA2+5428867..5431872hypothetical protein
LOC_Os02g10340OsAffx.20387.1.S1_x_at1/112+5432508..5438758retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10004.1.S1_s_at--122--2931Chr02:5413701..5413725 (25 bp)
AAGGAGCTCGCCTGCGTCTGATTTT
LOC_Os02g10300
Os.10004.1.S1_s_at--706--10491Chr02:5414031..5414055 (25 bp)
TTAATCATCGTTCCCTCCGCTACAT
LOC_Os02g10300
Os.10004.1.S1_s_at--778--9871Chr02:5414051..5414075 (25 bp)
TACATTCCCCTCACTTGTATTCTTC
LOC_Os02g10300
Os.10004.1.S1_s_at--351--4211Chr02:5414057..5414081 (25 bp)
CCCCTCACTTGTATTCTTCATCTAA
LOC_Os02g10300
Os.10004.1.S1_s_at--690--10711Chr02:5414144..5414168 (25 bp)
TTGCTTCTTCTTCGTTTGGAATATA
LOC_Os02g10300
Os.10004.1.S1_s_at--379--5231Chr02:5414162..5414186 (25 bp)
GAATATATGATTCTTGTCCTGATTT
LOC_Os02g10300
Os.10004.1.S1_s_at--309--6571Chr02:5414170..5414194 (25 bp)
GATTCTTGTCCTGATTTCATTTCAT
LOC_Os02g10300
Os.10004.1.S1_s_at--228--10331Chr02:5414184..5414208 (25 bp)
TTTCATTTCATTTAGTTTACTCGTT
LOC_Os02g10300
Os.10004.1.S1_s_at--901--3571Chr02:5414192..5414216 (25 bp)
CATTTAGTTTACTCGTTAATTGATT
LOC_Os02g10300
Os.10004.1.S1_s_at--1148--9731Chr02:5414224..5414248 (25 bp)
TAATTGTTATCCGTTTAGTTGTCGT
LOC_Os02g10300
Os.10004.1.S1_s_at--1114--6811Chr02:5414236..5414260 (25 bp)
GTTTAGTTGTCGTAGTTTAATCTCT
LOC_Os02g10300
Target Sequence 
AAGGAGCTCGCCTGCGTCTGATTTTCATCTTATTANACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTTA
AAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAG
AATATATTTCATATTGGATTTAATTAGACTAATTTAATATTTTATATGTTGCTATATTTTTTTTATAAATTTGTTTAAAC
TAAATAAAAATTGACTAGAAAAAGTCAAACAACTTATAATATGAAATGGAGATAGGGGGAGTAATTGTCGTCTGATTANN
NNNNNNTNNGTTAATCATCGTTCCCTCCGCTACATTCCCCTCACTTGTATTCTTCATCTAANTATTTTCCTCTCTCTCCC
TCTTCGGATTTTTTTAATTATTTTCTTCTATTTATTTTTATGTTTGCTTCTTCTTCGTTTGGAATATATGATTCTTGTCC
TGATTTCATTTCATTTAGTTTACTCGTTAATTGATTTATTAATTAATTGTTATCCGTTTAGTTGTCGTAGTTTAATCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10004.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis