Browse Element(s) Details


Os.6105.1.S1_at

Description gb:AK101350.1
DB_XREF= gi:32986559
TID=Os.6105.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034N17, full insert sequence.
FL= gb:AK101350.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1022011/11Chaperone protein dnaJ 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10160Os.25152.1.S1_at11/112+5324567..5328285expressed protein
LOC_Os02g10170OsAffx.11969.1.S1_at11/112+5329016..5330521expressed protein
LOC_Os02g10180Os.38811.1.S1_a_at11/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180OsAffx.16132.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180Os.25087.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10190Os.5227.1.S1_at11/112+5339189..5344517secreted protein, putative, expressed
LOC_Os02g10200Os.12188.1.S1_at11/112+5345611..5347486AN1-like Zinc finger family protein, expressed
LOC_Os02g10210OsAffx.18697.2.S1_at11/112+5348720..5350221expressed protein
LOC_Os02g10210Os.45990.2.S1_x_at8/112+5348720..5350221expressed protein
LOC_Os02g10220Os.6105.1.S1_at11/112+5351367..5355145Chaperone protein dnaJ 6, putative, expressed
LOC_Os02g10230Os.18721.1.S1_at11/112+5357310..5361629ZIP Zinc transporter family protein, expressed
LOC_Os02g10240Os.55753.1.S1_at11/112+5364450..5366226expressed protein
LOC_Os02g10240Os.55753.1.S1_x_at11/112+5364450..5366226expressed protein
LOC_Os02g10240OsAffx.29835.1.S1_x_at1/112+5364450..5366226expressed protein
LOC_Os02g10250OsAffx.11971.1.S1_at11/112+5369277..5369552hypothetical protein
LOC_Os02g10260Os.27720.1.S1_at10/112+5373128..5380134outer membrane protein, OMP85 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000740biological_processnuclear membrane fusion
GO:0006457biological_processprotein folding
GO:0009553biological_processfemale gametophyte development
GO:0009558biological_processcellularization of megagametophyte
GO:0010197biological_processpolar nuclei fusion
GO:0010198biological_processsynergid death
GO:0051085biological_processchaperone cofactor dependent protein folding
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6105.1.S1_at--942--8051Chr02:5354582..5354606 (25 bp)
GGAGAACGATCTGATCCTCGCGATC
LOC_Os02g10220
Os.6105.1.S1_at--929--4812Chr02:5354648..5354672 (25 bp)
GCTCTCATCCATCATGTCCAAATGT
LOC_Os02g10220
Os.6105.1.S1_at--208--5451Chr02:5354756..5354780 (25 bp)
GAACCGCAAATGATTCGCCTTGCAG
LOC_Os02g10220
Os.6105.1.S1_at--636--8291Chr02:5354791..5354815 (25 bp)
GGCTTGTGCAATTCTGTTTCATCGA
LOC_Os02g10220
Os.6105.1.S1_at--149--6771Chr02:5354820..5354844 (25 bp)
GTTAACCAGGCCTATCTTTGACAGA
LOC_Os02g10220
Os.6105.1.S1_at--1139--6591Chr02:5354848..5354872 (25 bp)
GATTGTCTGATATTCTGATCCCTAG
LOC_Os02g10220
Os.6105.1.S1_at--165--31Chr02:5354885..5354909 (25 bp)
ATTGGCTGCTTCTGTTGTGGTGCAA
LOC_Os02g10220
Os.6105.1.S1_at--351--8671Chr02:5354900..5354924 (25 bp)
TGTGGTGCAAGTTCAGGCTGGAATC
LOC_Os02g10220
Os.6105.1.S1_at--665--5251Chr02:5354920..5354944 (25 bp)
GAATCTGAACTTCCTGCTCTTTTGC
LOC_Os02g10220
Os.6105.1.S1_at--918--1591Chr02:5355052..5355076 (25 bp)
AGCTGTCTTGAGTTTTTACGCCTGT
LOC_Os02g10220
Os.6105.1.S1_at--517--1311Chr02:5355114..5355138 (25 bp)
AGAGGCGGGTTTGCAATCTCGTTTT
LOC_Os02g10220
Target Sequence 
GGAGAACGATCTGATCCTCGCGATCTCACAGCGCAGGGCGCAGCGGAAGGACCGGTTCGACTCGGTGCTCTCATCCATCA
TGTCCAAATGTGACCCAAAGGGGAGCAGCAGCTCGGAGCCCACGGAAGAGGAGTTTGAGCAAGCTCGTCAGAGGCTCGAG
AAAAAGCGTTCCAAGAACCGCAAATGATTCGCCTTGCAGCCTCCCTTGTGGCTTGTGCAATTCTGTTTCATCGAGTTTGT
TAACCAGGCCTATCTTTGACAGATCAGATTGTCTGATATTCTGATCCCTAGTATCTATGTGAGATTGGCTGCTTCTGTTG
TGGTGCAAGTTCAGGCTGGAATCTGAACTTCCTGCTCTTTTGCTGAAACTGGGGCCGATCTTTAGCATCACTGCATATGT
GTATAATCAAAATCTTAAATGTTTCCTGGATGTGAACTTGTGATCTAGTTTCTGTATAAGTTAATCCAGTAGCTGTCTTG
AGTTTTTACGCCTGTAAACGATATAAACAAGAATGCATCATCAACAGGGACGAGAGGCGGGTTTGCAATCTCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis