Browse Element(s) Details


OsAffx.16132.1.S1_at

Description tigr:9635.m00662
TID=OsAffx.16132.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g552901/11G10 protein homolog, putative, expressed
LOC_Os05g485001/11expressed protein
LOC_Os08g042701/11Polycomb group protein FIE2, putative, expressed
LOC_Os05g484501/11Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os04g049501/11Copper amine oxidase, enzyme domain containing protein
LOC_Os07g071941/11MAC/Perforin domain containing protein, expressed
LOC_Os11g439341/11pentatricopeptide, putative, expressed
LOC_Os08g075401/11hemimethylated DNA binding domain containing protein, expressed
LOC_Os02g445401/11expressed protein
LOC_Os02g101801/11DnaJ domain containing protein, expressed
LOC_Os07g438701/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55230Os.7692.1.S2_at11/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55230Os.7692.1.S1_at10/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55240Os.52439.1.S1_at11/114+32633073..32634031VQ motif family protein, expressed
LOC_Os04g55250Os.51420.1.S1_at11/114+32636588..32637580expressed protein
LOC_Os04g55260Os.20407.1.S1_at10/114+32637521..32641208expressed protein
LOC_Os04g55270OsAffx.4183.1.S1_at10/114+32644603..32645667hypothetical protein
LOC_Os04g55280NANA4+32645881..32648257hypothetical protein
LOC_Os04g55290Os.3537.1.S1_at11/114+32649048..32652552G10 protein homolog, putative, expressed
LOC_Os04g55290OsAffx.16132.1.S1_at1/114+32649048..32652552G10 protein homolog, putative, expressed
LOC_Os04g55300OsAffx.26611.2.S1_at9/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.26611.1.S1_x_at8/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.32209.1.A1_at5/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.32283.1.S1_at1/114+32652874..32655325hypothetical protein
LOC_Os04g55310Os.47999.2.A1_x_at1/114+32675235..32676347retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0000003biological_processreproduction
GO:0000740biological_processnuclear membrane fusion
GO:0006289biological_processnucleotide-excision repair
GO:0006457biological_processprotein folding
GO:0006955biological_processimmune response
GO:0008219biological_processcell death
GO:0009553biological_processfemale gametophyte development
GO:0009558biological_processcellularization of megagametophyte
GO:0009910biological_processnegative regulation of flower development
GO:0009960biological_processendosperm development
GO:0010197biological_processpolar nuclei fusion
GO:0010198biological_processsynergid death
GO:0051085biological_processchaperone cofactor dependent protein folding
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003824molecular_functioncatalytic activity
GO:0004518molecular_functionnuclease activity
GO:0005507molecular_functioncopper ion binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16132.1.S1_at--789--8111Chr07:3569083..3569107 (25 bp)
GGACGATGCGACCACAATATGGTGT
NONE
OsAffx.16132.1.S1_at--550--8931Chr07:3569049..3569073 (25 bp)
TGACCTCGAAGATGATGCGACGGAA
NONE
OsAffx.16132.1.S1_at--978--6291Chr07:3569039..3569063 (25 bp)
GATGATGCGACGGAACCACGCGTGC
NONE
OsAffx.16132.1.S1_at--749--591Chr07:3569035..3569059 (25 bp)
ATGCGACGGAACCACGCGTGCGCCT
NONE
OsAffx.16132.1.S1_at--1072--4651Chr07:3569022..3569044 (23 bp)
GCGTGCGCCTCTGCAGACAAGAGTA
NONE
OsAffx.16132.1.S1_at--164--5051NONE
GCAGACAAGAGTATCCGTATCCCTT
NONE
OsAffx.16132.1.S1_at--894--551Chr07:3567744..3567768 (25 bp)
ATCCGATATGGATACGACGCTTTCT
NONE
OsAffx.16132.1.S1_at--789--271Chr07:3567739..3567763 (25 bp)
ATATGGATACGACGCTTTCTGGACG
NONE
OsAffx.16132.1.S1_at--545--9932Chr07:3567732..3567756 (25 bp)
TACGACGCTTTCTGGACGTATCCAG
NONE
OsAffx.16132.1.S1_at--255--8111NONE
GGACGTATCCAGATGTAATTTGGTT
NONE
OsAffx.16132.1.S1_at--615--43513Chr08:2071404..2071427 (24 bp)
CCAGATGTAATTTGGTTACTGAATC
LOC_Os08g04270
Target Sequence 
GGACGATGCGACCACAATATGGTGTAGATGGAGTTGACCTCGAAGATGATGCGACGGAACCACGCGTGCGCCTCTGCAGA
CAAGAGTATCCGTATCCCTTCACGTATCCGATATGGATACGACGCTTTCTGGACGTATCCAGATGTAATTTGGTTACTGA
ATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis