Browse Element(s) Details


Os.7692.1.S1_at

Description gb:AK072140.1
DB_XREF= gi:32982163
TID=Os.7692.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122D02, full insert sequence.
FL= gb:AK072140.1 gb:AK100454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5523010/11Ataxin-2 C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55190OsAffx.14424.1.S1_x_at11/114+32588800..32593154hypothetical protein
LOC_Os04g55200OsAffx.14425.1.S1_at11/114+32598536..32600590coatomer epsilon subunit, putative
LOC_Os04g55210Os.24690.2.S1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55210Os.24690.1.A1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55220Os.51422.1.S1_at6/114+32607699..32612052CLB1, putative, expressed
LOC_Os04g55230Os.7692.1.S2_at11/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55230Os.7692.1.S1_at10/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55240Os.52439.1.S1_at11/114+32633073..32634031VQ motif family protein, expressed
LOC_Os04g55250Os.51420.1.S1_at11/114+32636588..32637580expressed protein
LOC_Os04g55260Os.20407.1.S1_at10/114+32637521..32641208expressed protein
LOC_Os04g55270OsAffx.4183.1.S1_at10/114+32644603..32645667hypothetical protein
LOC_Os04g55280NANA4+32645881..32648257hypothetical protein
LOC_Os04g55290Os.3537.1.S1_at11/114+32649048..32652552G10 protein homolog, putative, expressed
LOC_Os04g55290OsAffx.16132.1.S1_at1/114+32649048..32652552G10 protein homolog, putative, expressed
LOC_Os04g55300OsAffx.26611.2.S1_at9/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.26611.1.S1_x_at8/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.32209.1.A1_at5/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.32283.1.S1_at1/114+32652874..32655325hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7692.1.S1_at--790--9531Chr04:32625472..32625496 (25 bp)
TCTACTCCAATTTTCTTGTGGGCTT
LOC_Os04g55230
Os.7692.1.S1_at--334--7491Chr04:32625489..32625513 (25 bp)
GTGGGCTTTCACATCCAAATTCAGC
LOC_Os04g55230
Os.7692.1.S1_at--213--5591Chr04:32625555..32625579 (25 bp)
GAAATGTTCATGTCGCTCTCAGGTA
LOC_Os04g55230
Os.7692.1.S1_at--519--7231Chr04:32625566..32625590 (25 bp)
GTCGCTCTCAGGTACTTGCATGAAG
LOC_Os04g55230
Os.7692.1.S1_at--1074--8831NONE
TGATCACATTCAGACTGCTGCGAGC
NONE
Os.7692.1.S1_at--961--291Chr04:32626275..32626299 (25 bp)
ATAGCCCTCTCAATGATGGATGCAT
LOC_Os04g55230
Os.7692.1.S1_at--601--2131Chr04:32626322..32626346 (25 bp)
ACAGACCACCTTACAGATACTTCAG
LOC_Os04g55230
Os.7692.1.S1_at--194--6311Chr04:32626362..32626475 (25 bp)
GATGACCTTCGAACTCAGGATGCTG
LOC_Os04g55230
Os.7692.1.S1_at--423--2371Chr04:32626544..32626568 (25 bp)
AAACCTGACTCATCTATTGCAAGCA
LOC_Os04g55230
Os.7692.1.S1_at--24--6431Chr04:32626657..32626681 (25 bp)
GATCTACTTGACTACATAAGCCCGG
LOC_Os04g55230
Os.7692.1.S1_at--1105--5931Chr04:32627401..32627425 (25 bp)
GAGCACGACATAGGATCTCCTCATG
LOC_Os04g55230
Target Sequence 
TCTACTCCAATTTTCTTGTGGGCTTTCACATCCAAATTCAGCTGCCACATACATAAATGTGGCTATGATGGAAGAAGGTA
TGGGAAATGTTCATGTCGCTCTCAGGTACTTGCATGAAGCACTGAAGTGCAACAAGAGACTGCTAGGAGCTGATCACATT
CAGACTGCTGCGAGCTATCATGCCATAGCCATAGCCCTCTCAATGATGGATGCATACTCCTTGAGTGTTCAGCATGAACA
GACCACCTTACAGATACTTCAGGAGAAACTAGGACAAGATGACCTTCGAACTCAGGATGCTGCTGCATGGCTTGAGTATT
TTGAGTCAAAAGCATTAGAACAACAAGAGGCCGCCCGAAGGGGCATCCCAAAACCTGACTCATCTATTGCAAGCAAAGGA
CATCTTAGTGTATCAGATCTACTTGACTACATAAGCCCGGATCAGGAAAGAAAAGAGAGGGATACACAAAGAAAGGGCAG
GCGTGCAAAGAATAATATCAGAGCCCATCAAGGTGAATTAGTTGAAGAAAAGGAGAGCTTTGAGCACGACATAGGATCTC
CTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis