Browse Element(s) Details


Os.24690.2.S1_s_at

Description gb:CB670273
DB_XREF= gi:29673998
DB_XREF=OSJNEe03E09.f
CLONE=OSJNEe03E09
TID=Os.24690.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24690 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_198313.1 (A.thaliana) chloride channel-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5521011/11Chloride channel-like protein CLC-g, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55170NANA4+32578710..32578979Protease inhibitor/seed storage/LTP family protein
LOC_Os04g55180Os.12025.1.S1_a_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55180Os.54470.1.S1_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55190OsAffx.14424.1.S1_x_at11/114+32588800..32593154hypothetical protein
LOC_Os04g55200OsAffx.14425.1.S1_at11/114+32598536..32600590coatomer epsilon subunit, putative
LOC_Os04g55210Os.24690.2.S1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55210Os.24690.1.A1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55220Os.51422.1.S1_at6/114+32607699..32612052CLB1, putative, expressed
LOC_Os04g55230Os.7692.1.S2_at11/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55230Os.7692.1.S1_at10/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006821biological_processchloride transport
GO:0010167biological_processresponse to nitrate
GO:0005622cellular_componentintracellular
GO:0005247molecular_functionvoltage-gated chloride channel activity
GO:0005253molecular_functionanion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24690.2.S1_s_at--821--611Chr04:32602157..32602302 (25 bp)
ATGCTCGCCGGCAGATACGGGACAG
LOC_Os04g55210
Os.24690.2.S1_s_at--664--9131Chr04:32602307..32602331 (25 bp)
TGCGGTGTTCCTGGTTTCGAATTTC
LOC_Os04g55210
Os.24690.2.S1_s_at--1112--5211Chr04:32602325..32602349 (25 bp)
GAATTTCGCCCTTACGATGTTAGCA
LOC_Os04g55210
Os.24690.2.S1_s_at--325--9431Chr04:32602389..32602413 (25 bp)
TCGGGCATCCCTGAGGTGAAGGCTT
LOC_Os04g55210
Os.24690.2.S1_s_at--866--151Chr04:32602442..32602466 (25 bp)
ATTTTCTCTAAAGACCCTGGTGGTG
LOC_Os04g55210
Os.24690.2.S1_s_at--453--5351Chr04:32603409..32603431 (23 bp)
GAAGATTGTGGGTTGCATTGCTGCA
LOC_Os04g55210
Os.24690.2.S1_s_at--822--7791Chr04:32603462..32603486 (25 bp)
GGTCCTCTAGTACACACAGGTGCAT
LOC_Os04g55210
Os.24690.2.S1_s_at--94--4992Chr04:32603483..32603507 (25 bp)
GCATGCATTGCATCTATACTTGGAC
LOC_Os04g55210
Os.24690.2.S1_s_at--1020--2871Chr04:32603575..32603599 (25 bp)
AAGGGACCTTGTTACTTGTGGTGCT
LOC_Os04g55210
Os.24690.2.S1_s_at--205--7791Chr04:32603600..32603624 (25 bp)
GGTGCTGGTATTGCTGCTGCTTTCC
LOC_Os04g55210
Os.24690.2.S1_s_at--792--8531Chr04:32603638..32603662 (25 bp)
TGGAGTCCTGTTTGCTCTTGAAGCA
LOC_Os04g55210
Target Sequence 
ATGCTCGCCGGCAGATACGGGACAGCGTTTGCGGTGTTCCTGGTTTCGAATTTCGCCCTTACGATGTTAGCAACGGTGCT
GACGGTGTATGTGGCGCCGGCGGCGGCCGGGTCGGGCATCCCTGAGGTGAAGGCTTACTTGAACGGGGTTGATGCCCCCG
ACATATTTTCTCTAAAGACCCTGGTGGTGAAGATTGTGGGTTGCATTGCTGCAGTATCATCATCATTGCATGTGGGAAAA
GCTGGTCCTCTAGTACACACAGGTGCATGCATTGCATCTATACTTGGACAAGGTGGGTCAAGTAAATATCACCTGACATG
TAAATGGCTAAGGTACTTCAAGAATGATAGGGACCGAAGGGACCTTGTTACTTGTGGTGCTGGTGCTGGTATTGCTGCTG
CTTTCCGGGCACCAGTTGGTGGAGTCCTGTTTGCTCTTGAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24690.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis