Browse Element(s) Details


Os.12025.1.S1_a_at

Description gb:AK099966.1
DB_XREF= gi:32985175
TID=Os.12025.1
CNT=10
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.12025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127A03, full insert sequence.
FL= gb:AK099966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5518011/11alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55130OsAffx.4181.1.S1_at11/114+32558593..32560061expressed protein
LOC_Os04g55140Os.46785.2.S1_x_at3/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.442.1.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.30226.2.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55150Os.18254.1.A1_at11/114+32569674..32575089UBA/TS-N domain containing protein, expressed
LOC_Os04g55170NANA4+32578710..32578979Protease inhibitor/seed storage/LTP family protein
LOC_Os04g55180Os.12025.1.S1_a_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55180Os.54470.1.S1_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55190OsAffx.14424.1.S1_x_at11/114+32588800..32593154hypothetical protein
LOC_Os04g55200OsAffx.14425.1.S1_at11/114+32598536..32600590coatomer epsilon subunit, putative
LOC_Os04g55210Os.24690.2.S1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55210Os.24690.1.A1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55220Os.51422.1.S1_at6/114+32607699..32612052CLB1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12025.1.S1_a_at--85--10151Chr04:32585303..32585326 (24 bp)
TATCAAGTGGTGCACCTGGATTTGC
LOC_Os04g55180
Os.12025.1.S1_a_at--313--6531Chr04:32584027..32584147 (25 bp)
GATTTGCATTGCTTGAAGCTGCCAG
LOC_Os04g55180
Os.12025.1.S1_a_at--928--1591Chr04:32584011..32584035 (25 bp)
AGCTGCCAGGAAAGCTAACTTCCGA
LOC_Os04g55180
Os.12025.1.S1_a_at--17--2731Chr04:32583978..32584002 (25 bp)
AAGTAGAATTTCAGCCGGGTTTGCA
LOC_Os04g55180
Os.12025.1.S1_a_at--1091--3971Chr04:32583673..32583987 (25 bp)
CGGGTTTGCATCCAACAGCTGGGAA
LOC_Os04g55180
Os.12025.1.S1_a_at--1084--7591Chr04:32583653..32583677 (25 bp)
GGGAAAAACCAATATTGCTTGCATG
LOC_Os04g55180
Os.12025.1.S1_a_at--421--9291Chr04:32583602..32583626 (25 bp)
TCCCCATAGCTGAGGAGTTCCAGAA
LOC_Os04g55180
Os.12025.1.S1_a_at--651--7831Chr04:32583576..32583600 (25 bp)
GGTAATCCTGCAGCCATAAAATTGG
LOC_Os04g55180
Os.12025.1.S1_a_at--223--5311Chr04:32583543..32583567 (25 bp)
GAAGGAGCTGGTCATATGCCTCAAG
LOC_Os04g55180
Os.12025.1.S1_a_at--883--591Chr04:32583355..32583552 (25 bp)
ATGCCTCAAGAGGACTGGCCAGAGA
LOC_Os04g55180
Os.12025.1.S1_a_at--377--6631Chr04:32583328..32583352 (25 bp)
GTTGTGACGGCCCTAAGATCCTTCT
LOC_Os04g55180
Target Sequence 
TATCAAGTGGTGCACCTGGATTTGCATTGCTTGAAGCTGCCAGGAAAGCTAACTTCCGAGATGTATTAAGTAGAATTTCA
GCCGGGTTTGCATCCAACAGCTGGGAAAAACCAATATTGCTTGCATGGGGGATTTCTGATAAGTANTTGCCACTCCCCAT
AGCTGAGGAGTTCCAGAAAGGTAATCCTGCAGCCATAAAATTGGAGCCAATAGAAGGAGCTGGTCATATGCCTCAAGAGG
ACTGGCCAGAGAAGGTTGTGACGGCCCTAAGATCCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12025.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis