Browse Element(s) Details


OsAffx.14424.1.S1_x_at

Description tigr:9632.m05367
TID=OsAffx.14424.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5519011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55140Os.46785.2.S1_x_at3/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.442.1.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.30226.2.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55150Os.18254.1.A1_at11/114+32569674..32575089UBA/TS-N domain containing protein, expressed
LOC_Os04g55170NANA4+32578710..32578979Protease inhibitor/seed storage/LTP family protein
LOC_Os04g55180Os.12025.1.S1_a_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55180Os.54470.1.S1_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55190OsAffx.14424.1.S1_x_at11/114+32588800..32593154hypothetical protein
LOC_Os04g55200OsAffx.14425.1.S1_at11/114+32598536..32600590coatomer epsilon subunit, putative
LOC_Os04g55210Os.24690.2.S1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55210Os.24690.1.A1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55220Os.51422.1.S1_at6/114+32607699..32612052CLB1, putative, expressed
LOC_Os04g55230Os.7692.1.S2_at11/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55230Os.7692.1.S1_at10/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14424.1.S1_x_at--1091--1331Chr04:32589422..32589446 (25 bp)
AGAGATCAAGTCTCGTTTCCTCGGC
LOC_Os04g55190
OsAffx.14424.1.S1_x_at--946--7951Chr04:32589378..32589402 (25 bp)
GGATCAACGGTTAGCAGCTCGGCAT
LOC_Os04g55190
OsAffx.14424.1.S1_x_at--451--6451Chr04:32589338..32589362 (25 bp)
GATCAAGGTTATGTTCCTCGGCTTC
LOC_Os04g55190
OsAffx.14424.1.S1_x_at--415--10671Chr04:32589316..32589340 (25 bp)
TTCCTCCTCCTGTACTAGAAGATCA
LOC_Os04g55190
OsAffx.14424.1.S1_x_at--302--151Chr04:32589261..32589285 (25 bp)
ATTAGCTGGTCAAGGCTTCGTTCCT
LOC_Os04g55190
OsAffx.14424.1.S1_x_at--777--2251Chr04:32589213..32589237 (25 bp)
AAATCAAGGCTTCTTTCCTCGGCGT
LOC_Os04g55190
OsAffx.14424.1.S1_x_at--817--6631Chr04:32589190..32589214 (25 bp)
GTTGTCCTCCATTTGCAGGTCAAGA
LOC_Os04g55190
OsAffx.14424.1.S1_x_at--849--6691Chr04:32589144..32589168 (25 bp)
GTTCCATGCAAATCAAGGCCCATTT
LOC_Os04g55190
OsAffx.14424.1.S1_x_at--633--7391Chr04:32588976..32589000 (25 bp)
GTGAGGCCACCTAGCAATTTTGCTC
LOC_Os04g55190
OsAffx.14424.1.S1_x_at--696--7271Chr04:32588936..32588960 (25 bp)
GTCCAGTTCTGCATCCAGGGCAAGA
LOC_Os04g55190
OsAffx.14424.1.S1_x_at--1113--2291Chr04:32588875..32588899 (25 bp)
AAATGGTCCATCAGGCTCTGGCAAC
LOC_Os04g55190
Target Sequence 
AGAGATCAAGTCTCGTTTCCTCGGCATCCTCCACCTGCACAAGGGGATCAACGGTTAGCAGCTCGGCATCCTCCTGTACT
AGCAGATCAAGGTTATGTTCCTCGGCTTCCTCCTCCTGTACTAGAAGATCAAGGCCTTGCTCCTCGGTGTCCTCCTCCTG
CATTAGCTGGTCAAGGCTTCGTTCCTCGGCATCCTCCACCTGTACTACCAAATCAAGGCTTCTTTCCTCGGCGTTGTCCT
CCATTTGCAGGTCAAGACTTATATCCTTGGCGTCCTCCGTTCCATGCAAATCAAGGCCCATTTCCTCGTCATGCTCCTCC
ACATCCTTGTCCTCCATTTACTCCAGGACACGTGAGGCCACCTAGCAATTTTGCTCCCCCTGGCCCTTGGCGTCCAGTTC
TGCATCCAGGGCAAGAACACCATCACCATCACTACGGACATCCTGGAAGATCAAATGGTCCATCAGGCTCTGGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14424.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis