Browse Element(s) Details


OsAffx.14425.1.S1_at

Description tigr:9632.m05368
TID=OsAffx.14425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Coatomer epsilon subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5520011/11coatomer epsilon subunit, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55150Os.18254.1.A1_at11/114+32569674..32575089UBA/TS-N domain containing protein, expressed
LOC_Os04g55170NANA4+32578710..32578979Protease inhibitor/seed storage/LTP family protein
LOC_Os04g55180Os.12025.1.S1_a_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55180Os.54470.1.S1_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55190OsAffx.14424.1.S1_x_at11/114+32588800..32593154hypothetical protein
LOC_Os04g55200OsAffx.14425.1.S1_at11/114+32598536..32600590coatomer epsilon subunit, putative
LOC_Os04g55210Os.24690.2.S1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55210Os.24690.1.A1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55220Os.51422.1.S1_at6/114+32607699..32612052CLB1, putative, expressed
LOC_Os04g55230Os.7692.1.S2_at11/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55230Os.7692.1.S1_at10/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006890biological_processretrograde vesicle-mediated transport, Golgi to ER
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14425.1.S1_at--651--4751Chr04:32599373..32599397 (25 bp)
GCTGAACGAGCTCCTGGCAGATGAT
LOC_Os04g55200
OsAffx.14425.1.S1_at--1113--7891Chr04:32599439..32599463 (25 bp)
GGTTCTCATGCACGAGCGGGACTAT
LOC_Os04g55200
OsAffx.14425.1.S1_at--41--5711Chr04:32599458..32599482 (25 bp)
GACTATGCCGGAGCACTGAAGCACA
LOC_Os04g55200
OsAffx.14425.1.S1_at--316--7491Chr04:32599492..32599732 (25 bp)
GTGGGACTATGGAATTGCTTGCGAT
LOC_Os04g55200
OsAffx.14425.1.S1_at--1159--5271Chr04:32599733..32599757 (25 bp)
GAATGTTCAGATATGCCTCCAGATG
LOC_Os04g55200
OsAffx.14425.1.S1_at--163--4771Chr04:32599829..32599853 (25 bp)
GCTCGCAAACGCATGGGTAGACCTT
LOC_Os04g55200
OsAffx.14425.1.S1_at--714--8731Chr04:32599853..32599986 (25 bp)
TGTCATGGGCGGGTCCAAGATCCAA
LOC_Os04g55200
OsAffx.14425.1.S1_at--924--1411Chr04:32600269..32600293 (25 bp)
AGAAACTCTAGCCAACCTCGTTGTG
LOC_Os04g55200
OsAffx.14425.1.S1_at--485--2631Chr04:32600282..32600306 (25 bp)
AACCTCGTTGTGTGCAGTCTGAACC
LOC_Os04g55200
OsAffx.14425.1.S1_at--339--2631Chr04:32600303..32600327 (25 bp)
AACCTAGGAAAGTCTGCATCCCGCT
LOC_Os04g55200
OsAffx.14425.1.S1_at--424--7891Chr04:32600530..32600554 (25 bp)
GGTTAAGCGAATGTCCTCTGCTGAA
LOC_Os04g55200
Target Sequence 
GCTGAACGAGCTCCTGGCAGATGATGCGGTGGGGAGCAACCCGATTCTCCGGCTGGTTGCAGGGACGGTTCTCATGCACG
AGCGGGACTATGCCGGAGCACTGAAGCACACAAATTCTGGTGGGACTATGGAATTGCTTGCGATGAATGTTCAGATATGC
CTCCAGATGCACAGGTCTGATCACGCAGAGAAACAGCTGAGGATAATGCAGCAATTGGACGAAGACCACACACTGACGCA
GCTCGCAAACGCATGGGTAGACCTTGTCATGGGCGGGTCCAAGATCCAAGAAGCGCACCTCATCTTCCAGGACTTGTCAG
AGAAGTACCCAGCAACTTGCTTAATTCTTAATGGTAAAGCACTGTGCCTGATGCACATGGGTAACTTTGAAGATGCAGAG
GGATTGCTGCTGGAATCACTGAACAAGGATGCCAAGGATGCAGAAACTCTAGCCAACCTCGTTGTGTGCAGTCTGAACCT
AGGAAAGTCTGCATCCCGCTACCTGAACCAACTGAAGCTGGCACACCCAGACCATATGCTGGTTAAGCGAATGTCCTCTG
CTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis