Browse Element(s) Details


Os.18254.1.A1_at

Description gb:AK062549.1
DB_XREF= gi:32972567
TID=Os.18254.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18254 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-G11, full insert sequence.
FL= gb:AK062549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5515011/11UBA/TS-N domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55100OsAffx.4180.1.S1_at10/114+32545749..32547296expressed protein
LOC_Os04g55110Os.53825.1.S1_at11/114+32550489..32553189expressed protein
LOC_Os04g55110OsAffx.18731.1.A1_at1/114+32550489..32553189expressed protein
LOC_Os04g55120Os.48263.1.S1_at5/114+32554329..32554895hypothetical protein
LOC_Os04g55130OsAffx.4181.1.S1_at11/114+32558593..32560061expressed protein
LOC_Os04g55140Os.46785.2.S1_x_at3/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.442.1.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.30226.2.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55150Os.18254.1.A1_at11/114+32569674..32575089UBA/TS-N domain containing protein, expressed
LOC_Os04g55170NANA4+32578710..32578979Protease inhibitor/seed storage/LTP family protein
LOC_Os04g55180Os.12025.1.S1_a_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55180Os.54470.1.S1_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55190OsAffx.14424.1.S1_x_at11/114+32588800..32593154hypothetical protein
LOC_Os04g55200OsAffx.14425.1.S1_at11/114+32598536..32600590coatomer epsilon subunit, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18254.1.A1_at--24--7991Chr04:32573445..32573469 (25 bp)
GGATGCCTTGGATGACTATGATATT
LOC_Os04g55150
Os.18254.1.A1_at--763--5311Chr04:32573482..32573506 (25 bp)
GAAGGGCAGGCTATATCAGAGTACC
LOC_Os04g55150
Os.18254.1.A1_at--88--6991Chr04:32573502..32573526 (25 bp)
GTACCTGAGCTTACTGGATTCTGCT
LOC_Os04g55150
Os.18254.1.A1_at--660--7931Chr04:32573517..32573541 (25 bp)
GGATTCTGCTGCTTAGGCTTGATGT
LOC_Os04g55150
Os.18254.1.A1_at--711--2391Chr04:32573544..32573568 (25 bp)
AAACATATTACTCACCTGGTCTAGA
LOC_Os04g55150
Os.18254.1.A1_at--425--5591Chr04:32573592..32573616 (25 bp)
GAAATATAGTCAGCCTCAATCCGAG
LOC_Os04g55150
Os.18254.1.A1_at--259--7031Chr04:32573642..32573666 (25 bp)
GTACATGAGTTTACCTTTCTGCCAC
LOC_Os04g55150
Os.18254.1.A1_at--73--9491Chr04:32573659..32573683 (25 bp)
TCTGCCACCTGGAAACTTATTACCG
LOC_Os04g55150
Os.18254.1.A1_at--105--9251Chr04:32573733..32573757 (25 bp)
TCCTTGTGCTATCAACTGTATCTTA
LOC_Os04g55150
Os.18254.1.A1_at--346--1891Chr04:32573769..32573793 (25 bp)
ACGTATGTAGTTCCTATAGTTCCTA
LOC_Os04g55150
Os.18254.1.A1_at--915--9791Chr04:32573807..32573827 (21 bp)
TAAGCTCGCGAGTATAGCACACTGA
LOC_Os04g55150
Target Sequence 
GGATGCCTTGGATGACTATGATATTGATGTTAGCAACGAAGGGCAGGCTATATCAGAGTACCTGAGCTTACTGGATTCTG
CTGCTTAGGCTTGATGTGCAAACATATTACTCACCTGGTCTAGATAGTTTTTATCAAACCTCAGNAAGAAATATAGTCAG
CCTCAATCCGAGAGAGTTTGCTTAATAGGGTCGATTTGTACATGAGTTTACCTTTCTGCCACCTGGAAACTTATTACCGT
GTGCNTAAGTAATTTCTCATGGATAGCAATCTCAGCTTTAGAANNNANTCCTTGTGCTATCAACTGTATCTTAATATGTG
TAGTACGTATGTAGTTCCTATAGTTCCTATAGGGTAACTAGATAAGCTCGCGAGTATAGCACACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18254.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis