Browse Element(s) Details


OsAffx.4180.1.S1_at

Description tigr:9632.m05357
TID=OsAffx.4180.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5510010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55050NANA4+32517489..32520773Glutamyl-tRNA, putative, expressed
LOC_Os04g55060Os.13976.1.S1_at11/114+32522310..325274053-oxoacyl-synthase III B, chloroplast precursor, putative, expressed
LOC_Os04g55070OsAffx.4179.1.S1_at11/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55070OsAffx.13740.1.S1_at1/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55080Os.19084.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55080OsAffx.14423.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55090Os.53360.1.S1_at11/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55090Os.53360.1.S2_at10/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55100OsAffx.4180.1.S1_at10/114+32545749..32547296expressed protein
LOC_Os04g55110Os.53825.1.S1_at11/114+32550489..32553189expressed protein
LOC_Os04g55110OsAffx.18731.1.A1_at1/114+32550489..32553189expressed protein
LOC_Os04g55120Os.48263.1.S1_at5/114+32554329..32554895hypothetical protein
LOC_Os04g55130OsAffx.4181.1.S1_at11/114+32558593..32560061expressed protein
LOC_Os04g55140Os.46785.2.S1_x_at3/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.442.1.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.30226.2.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55150Os.18254.1.A1_at11/114+32569674..32575089UBA/TS-N domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4180.1.S1_at--720--8311Chr04:32545905..32546055 (25 bp)
GGCTACAAGAGCACATGGGATCAGG
LOC_Os04g55100
OsAffx.4180.1.S1_at--8--6451Chr04:32546049..32546073 (25 bp)
GATCAGGCTGGACAGGCAGTTACAT
LOC_Os04g55100
OsAffx.4180.1.S1_at--536--411Chr04:32546190..32546214 (25 bp)
ATCATGCGTGACTCAAAGGCCGAGC
LOC_Os04g55100
OsAffx.4180.1.S1_at--791--2951Chr04:32546205..32546229 (25 bp)
AAGGCCGAGCAATCACTAAATACAG
LOC_Os04g55100
OsAffx.4180.1.S1_at--785--3731Chr04:32546220..32546244 (25 bp)
CTAAATACAGCTCGTTTGATGAACA
LOC_Os04g55100
OsAffx.4180.1.S1_at--638--5511Chr04:32546240..32546264 (25 bp)
GAACAAGCACTGCACATCCGATGGG
LOC_Os04g55100
OsAffx.4180.1.S1_at--155--7591NONE
GGGCATTGCAACTCAGGAAAGGTAC
NONE
OsAffx.4180.1.S1_at--644--9851Chr04:32546941..32546965 (25 bp)
TACAAAGGCCAGTGGTGCAGGCTGA
LOC_Os04g55100
OsAffx.4180.1.S1_at--245--6031Chr04:32547134..32547158 (25 bp)
GAGATCAGGTGATGCCAATCAGCAG
LOC_Os04g55100
OsAffx.4180.1.S1_at--628--4091Chr04:32547211..32547235 (25 bp)
CGACGATGACGACGTACCCTGACAT
LOC_Os04g55100
OsAffx.4180.1.S1_at--954--3531Chr04:32547242..32547266 (25 bp)
CATCGCCGGAATGGACTATTCGCCG
LOC_Os04g55100
Target Sequence 
GGCTACAAGAGCACATGGGATCAGGCTGGACAGGCAGTTACATGAAGCAATCAACAACAAGCAGGAGATCATGCGTGACT
CAAAGGCCGAGCAATCACTAAATACAGCTCGTTTGATGAACAAGCACTGCACATCCGATGGGCATTGCAACTCAGGAAAG
GTACAAAGGCCAGTGGTGCAGGCTGAGGCAGGCGCAGCAGCGAAGCAGCAGCAGCAGAATCAGAGCCTAGAGAGATCAGG
TGATGCCAATCAGCAGGAGCAGGAGACGGCGCCGCGACAGCAAGAGAAGACGTCGTCGACGGCTACGGCGACGATGACGA
CGTACCCTGACATCCTCGACATCGCCGGAATGGACTATTCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis