Browse Element(s) Details


Os.53825.1.S1_at

Description gb:AK100283.1
DB_XREF= gi:32985492
TID=Os.53825.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023074O21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074O21, full insert sequence.
FL= gb:AK100283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5511011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55060Os.13976.1.S1_at11/114+32522310..325274053-oxoacyl-synthase III B, chloroplast precursor, putative, expressed
LOC_Os04g55070OsAffx.4179.1.S1_at11/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55070OsAffx.13740.1.S1_at1/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55080Os.19084.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55080OsAffx.14423.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55090Os.53360.1.S1_at11/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55090Os.53360.1.S2_at10/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55100OsAffx.4180.1.S1_at10/114+32545749..32547296expressed protein
LOC_Os04g55110Os.53825.1.S1_at11/114+32550489..32553189expressed protein
LOC_Os04g55110OsAffx.18731.1.A1_at1/114+32550489..32553189expressed protein
LOC_Os04g55120Os.48263.1.S1_at5/114+32554329..32554895hypothetical protein
LOC_Os04g55130OsAffx.4181.1.S1_at11/114+32558593..32560061expressed protein
LOC_Os04g55140Os.46785.2.S1_x_at3/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.442.1.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.30226.2.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55150Os.18254.1.A1_at11/114+32569674..32575089UBA/TS-N domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53825.1.S1_at--937--1451Chr04:32552689..32552713 (25 bp)
AGAAGTTCGAGTGCCAGACCACCGG
LOC_Os04g55110
Os.53825.1.S1_at--31--1171Chr04:32552812..32552836 (25 bp)
AGTACGGCCCGTTCTTGATGGAGCT
LOC_Os04g55110
Os.53825.1.S1_at--882--10771Chr04:32552826..32552850 (25 bp)
TTGATGGAGCTCCAGGACTGCAGCT
LOC_Os04g55110
Os.53825.1.S1_at--892--951Chr04:32552839..32552863 (25 bp)
AGGACTGCAGCTTCGTCCGGGAGAC
LOC_Os04g55110
Os.53825.1.S1_at--368--1551Chr04:32552847..32552871 (25 bp)
AGCTTCGTCCGGGAGACGTTCACGG
LOC_Os04g55110
Os.53825.1.S1_at--677--6431Chr04:32552873..32552897 (25 bp)
GATCAGCGACAACAACTGCCCGGGC
LOC_Os04g55110
Os.53825.1.S1_at--41--4511Chr04:32552949..32552973 (25 bp)
GCCGTCATGATGTCCATCGTCTTCT
LOC_Os04g55110
Os.53825.1.S1_at--1101--5351Chr04:32553031..32553055 (25 bp)
GAAGAGTGATACTGTACATCGCAAT
LOC_Os04g55110
Os.53825.1.S1_at--24--9891Chr04:32553045..32553069 (25 bp)
TACATCGCAATATGGCATGCCTGCC
LOC_Os04g55110
Os.53825.1.S1_at--510--5091Chr04:32553086..32553110 (25 bp)
GCACCTGTTCATCAATCTGATCTGG
LOC_Os04g55110
Os.53825.1.S1_at--1084--471Chr04:32553100..32553124 (25 bp)
ATCTGATCTGGTGATTTGTACTATA
LOC_Os04g55110
Target Sequence 
AGAAGTTCGAGTGCCAGACCACCGGGCCGCCCGGGTCCGAGGTGTGCGCGACGGAGGGGAGGGTGACGCCGGCGGCGTAC
GGGCAGATGACGGCGGCGGCGAGCATCAGCCAGGGGCTGTACCAGTACGGCCCGTTCTTGATGGAGCTCCAGGACTGCAG
CTTCGTCCGGGAGACGTTCACGGCGATCAGCGACAACAACTGCCCGGGCCTCGAGCTCTACAGCCGGCACGTCTACCTCG
GCCTGCTCCTCATCTCCGGCGCCGTCATGATGTCCATCGTCTTCTGGATGGTGCACACGCGGCAGCGGCGGCGGCGCTCG
CTCGGGCTCGGCAGGTAGATGTGAAGAGTGATACTGTACATCGCAATATGGCATGCCTGCCATGGCAGCCATGCCCCGCA
CCTGTTCATCAATCTGATCTGGTGATTTGTACTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis