Browse Element(s) Details


Os.53360.1.S2_at

Description gb:AK101087.1
DB_XREF= gi:32986296
TID=Os.53360.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024K07, full insert sequence.
FL= gb:AK108565.1 gb:AK101087.1 gb:AK072261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5509010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55040Os.6429.1.S1_a_at11/114+32513573..32516474Vacuolar ATP synthase subunit D 1, putative, expressed
LOC_Os04g55050NANA4+32517489..32520773Glutamyl-tRNA, putative, expressed
LOC_Os04g55060Os.13976.1.S1_at11/114+32522310..325274053-oxoacyl-synthase III B, chloroplast precursor, putative, expressed
LOC_Os04g55070OsAffx.4179.1.S1_at11/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55070OsAffx.13740.1.S1_at1/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55080Os.19084.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55080OsAffx.14423.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55090Os.53360.1.S1_at11/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55090Os.53360.1.S2_at10/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55100OsAffx.4180.1.S1_at10/114+32545749..32547296expressed protein
LOC_Os04g55110Os.53825.1.S1_at11/114+32550489..32553189expressed protein
LOC_Os04g55110OsAffx.18731.1.A1_at1/114+32550489..32553189expressed protein
LOC_Os04g55120Os.48263.1.S1_at5/114+32554329..32554895hypothetical protein
LOC_Os04g55130OsAffx.4181.1.S1_at11/114+32558593..32560061expressed protein
LOC_Os04g55140Os.46785.2.S1_x_at3/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.442.1.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.30226.2.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53360.1.S2_at--943--3011Chr04:32542082..32542106 (25 bp)
AATGCTCTTATTCCTAGTTTCTTGA
LOC_Os04g55090
Os.53360.1.S2_at--918--2311Chr04:32542112..32542136 (25 bp)
AAAGTGATCTTTTTCCCCTCTAGTG
LOC_Os04g55090
Os.53360.1.S2_at--956--191Chr04:32542151..32542175 (25 bp)
ATTTCTGTCACTCTGTCCAGTTAGG
LOC_Os04g55090
Os.53360.1.S2_at--236--191Chr04:32542179..32542203 (25 bp)
ATTTACATGCAGACGGCTTCGTGCC
LOC_Os04g55090
Os.53360.1.S2_at--316--3151Chr04:32543060..32543084 (25 bp)
AATTAATTCTCGGTGCTGCAGCTAC
LOC_Os04g55090
Os.53360.1.S2_at--927--6231Chr04:32543092..32543116 (25 bp)
GATGGCTTCGCAATCTATAGCTTAA
LOC_Os04g55090
Os.53360.1.S2_at--847--4451Chr04:32543219..32543243 (25 bp)
GCCTAGCTGCAGTATTCTTTTGTCG
LOC_Os04g55090
Os.53360.1.S2_at--150--10831Chr04:32543238..32543262 (25 bp)
TTGTCGTTTGTAGTCTGTACCTTCT
LOC_Os04g55090
Os.53360.1.S2_at--985--6271Chr04:32543287..32543311 (25 bp)
GATGTTCCAGTGTTTAGCTGCCGAA
LOC_Os04g55090
Os.53360.1.S2_at--919--9671Chr04:32543336..32543360 (25 bp)
TCACCTGCCCTTAATGGCTTAATTG
LOC_Os04g55090
Os.53360.1.S2_at--616--71NONE
ATTGCGCTGCTTTGTGGAGCAACTC
NONE
Target Sequence 
AATGCTCTTATTCCTAGTTTCTTGAACTCAAAAGTGATCTTTTTCCCCTCTAGTGGAGTTCTCCTTGCCATTTCTGTCAC
TCTGTCCAGTTAGGAAAATTTACATGCAGACGGCTTCGTGCCTGCCCAATTTTCTTGTTGCATCATTTGGAGGAATTTAA
CACAAGTATTCCAGGGAGCAGAAGAAAGCAGGCGAGGGAGTGACATCAACAGATCTACAGATGGTGGTAAGATCATGACT
TTGCTAGGAGGATACTGGACACTGATAATTAATTCTCGGTGCTGCAGCTACCGAAGTTGATGGCTTCGCAATCTATAGCT
TAATTTTTAAGCTGCATGGGGACTGGAGGATTCACGAACAGTTCAGGAGCAATGAAGCTACAGCCAGCAAGAGAAGATGC
ATACCACTAGTAGTACCCATACTTCGCCTAGCTGCAGTATTCTTTTGTCGTTTGTAGTCTGTACCTTCTGCTGGGGCTTT
ATCATGGCAACGAGATGTTCCAGTGTTTAGCTGCCGAAAACCTGTCAGTTGGAGGCAGGTGCTCACCTGCCCTTAATGGC
TTAATTGCGCTGCTTTGTGGAGCAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53360.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis