Browse Element(s) Details


OsAffx.18731.1.A1_at

Description tigr:9639.m00709
TID=OsAffx.18731.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=disease resistance response proteindirigent protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g551101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55060Os.13976.1.S1_at11/114+32522310..325274053-oxoacyl-synthase III B, chloroplast precursor, putative, expressed
LOC_Os04g55070OsAffx.4179.1.S1_at11/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55070OsAffx.13740.1.S1_at1/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55080Os.19084.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55080OsAffx.14423.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55090Os.53360.1.S1_at11/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55090Os.53360.1.S2_at10/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55100OsAffx.4180.1.S1_at10/114+32545749..32547296expressed protein
LOC_Os04g55110Os.53825.1.S1_at11/114+32550489..32553189expressed protein
LOC_Os04g55110OsAffx.18731.1.A1_at1/114+32550489..32553189expressed protein
LOC_Os04g55120Os.48263.1.S1_at5/114+32554329..32554895hypothetical protein
LOC_Os04g55130OsAffx.4181.1.S1_at11/114+32558593..32560061expressed protein
LOC_Os04g55140Os.46785.2.S1_x_at3/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.442.1.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.30226.2.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55150Os.18254.1.A1_at11/114+32569674..32575089UBA/TS-N domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18731.1.A1_at--982--4152Chr11:3929998..3930022 (25 bp)
CGCCGGCGGCGTTGTACCAGTACGT
NONE
OsAffx.18731.1.A1_at--1124--9971Chr11:3930036..3930060 (25 bp)
TAGCCGCGGGCGAAGCGGAACGCGC
NONE
OsAffx.18731.1.A1_at--926--10711Chr11:3930105..3930129 (25 bp)
TTGGGCCCGAAGATGGCAACGCTGC
NONE
OsAffx.18731.1.A1_at--391--9171Chr11:3930130..3930154 (25 bp)
TGCCGTTGTACGGCTCATCGGCGGC
NONE
OsAffx.18731.1.A1_at--680--5871Chr11:3930269..3930293 (25 bp)
GAGCGGGTCGTCGATGACGTACACA
NONE
OsAffx.18731.1.A1_at--265--7211Chr11:3930275..3930299 (25 bp)
GTCGTCGATGACGTACACAGTGCCG
NONE
OsAffx.18731.1.A1_at--615--7211Chr11:3930278..3930302 (25 bp)
GTCGATGACGTACACAGTGCCGAAC
NONE
OsAffx.18731.1.A1_at--697--8931Chr11:3930283..3930307 (25 bp)
TGACGTACACAGTGCCGAACACCGT
NONE
OsAffx.18731.1.A1_at--587--2131Chr11:3930291..3930315 (25 bp)
ACAGTGCCGAACACCGTCGCGGAGG
NONE
OsAffx.18731.1.A1_at--127--7831Chr11:3930365..3930389 (25 bp)
GGTCACCACATCGTGCCAGTACACA
NONE
OsAffx.18731.1.A1_at--854--4011Chr11:3930434..3930458 (25 bp)
CGTCACGGCCTGGAGGAGTAGCGCC
NONE
Target Sequence 
CGCCGGCGGCGTTGTACCAGTACGTGGTGGCGCGGCAGTAGCCGCGGGCGAAGCGGAACGCGCCGGTGCCGCCGACCACG
GGGATCTCACTCACCGGCCTCGCCGGGTTGGGCCCGAAGATGGCAACGCTGCTGCCGTTGTACGGCTCATCGGCGGCGAA
CACGAAGCTCATCGCCATCAGCAGCGACATCGTCTCCTTCCCGGCGCTCACGTACATCCCCTGCGCATGGCCGACCAGCC
TCGACGGCGCCGTCAGGCTGGGCCCGTCGGTGAGCGGGTCGTCGATGACGTACACAGTGCCGAACACCGTCGCGGAGGCC
CTCGACGTCGGCGCCTCCGCCACCTTCGCCACCGTCGAGTTCGGCCCGGTCACCACATCGTGCCAGTACACACGCATCCG
CATCTCCTTCTGCTGCCCCGCCGCCTCCGCCGCCGCCGTCACGGCCTGGAGGAGTAGCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18731.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis