Browse Element(s) Details


Os.19084.1.S1_at

Description gb:AK105170.1
DB_XREF= gi:32990379
TID=Os.19084.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-F07, full insert sequence.
FL= gb:AK105170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5508011/11Cyclic nucleotide-gated ion channel 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55030Os.17406.1.S1_at11/114+32507274..32511697Cullin family protein, expressed
LOC_Os04g55040Os.6429.1.S1_a_at11/114+32513573..32516474Vacuolar ATP synthase subunit D 1, putative, expressed
LOC_Os04g55050NANA4+32517489..32520773Glutamyl-tRNA, putative, expressed
LOC_Os04g55060Os.13976.1.S1_at11/114+32522310..325274053-oxoacyl-synthase III B, chloroplast precursor, putative, expressed
LOC_Os04g55070OsAffx.4179.1.S1_at11/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55070OsAffx.13740.1.S1_at1/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55080Os.19084.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55080OsAffx.14423.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55090Os.53360.1.S1_at11/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55090Os.53360.1.S2_at10/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55100OsAffx.4180.1.S1_at10/114+32545749..32547296expressed protein
LOC_Os04g55110Os.53825.1.S1_at11/114+32550489..32553189expressed protein
LOC_Os04g55110OsAffx.18731.1.A1_at1/114+32550489..32553189expressed protein
LOC_Os04g55120Os.48263.1.S1_at5/114+32554329..32554895hypothetical protein
LOC_Os04g55130OsAffx.4181.1.S1_at11/114+32558593..32560061expressed protein
LOC_Os04g55140Os.46785.2.S1_x_at3/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.442.1.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.30226.2.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19084.1.S1_at--753--10831Chr04:32539075..32539099 (25 bp)
TTGTGGCCAGTCAGTTCAGGAGGCT
LOC_Os04g55080
Os.19084.1.S1_at--239--9631Chr04:32539090..32539114 (25 bp)
TCAGGAGGCTCCACAGTAGGCAAGT
LOC_Os04g55080
Os.19084.1.S1_at--337--3451Chr04:32539103..32539127 (25 bp)
CAGTAGGCAAGTTCAGCACACGTTC
LOC_Os04g55080
Os.19084.1.S1_at--447--6731Chr04:32539130..32539154 (25 bp)
GTTCTATTCCCAGCACTGGAGGACA
LOC_Os04g55080
Os.19084.1.S1_at--17--2111Chr04:32539152..32539176 (25 bp)
ACATGGGCGGCCTGTTTCATTCAAG
LOC_Os04g55080
Os.19084.1.S1_at--99--9951Chr04:32539290..32539314 (25 bp)
TACGCATCTCGCTTTGCAGCTAATG
LOC_Os04g55080
Os.19084.1.S1_at--881--6171Chr04:32539321..32539345 (25 bp)
GAGGAGTTCACAGGCTCAGAAGCAG
LOC_Os04g55080
Os.19084.1.S1_at--583--7551Chr04:32539345..32539369 (25 bp)
GGGCCAGCCCGACAATTGTGAGATT
LOC_Os04g55080
Os.19084.1.S1_at--309--5431Chr04:32539383..32539407 (25 bp)
GAACCAGATTTTGCCGTCGATGAAG
LOC_Os04g55080
Os.19084.1.S1_at--47--7051Chr04:32539535..32539559 (25 bp)
GTAACCACGCAAGAACCATCACGGA
LOC_Os04g55080
Os.19084.1.S1_at--892--7131Chr04:32539574..32539595 (22 bp)
GTCTTGCACTGCTAAATCCCATATG
LOC_Os04g55080
Target Sequence 
TTGTGGCCAGTCAGTTCAGGAGGCTCCACAGTAGGCAAGTTCAGCACACGTTCCGGTTCTATTCCCAGCACTGGAGGACA
TGGGCGGCCTGTTTCATTCAAGCGGNNNNGNCNNCNCTATTACAAGAGGAAGATGNCCGAGCAGCATCGCAAGGAAGAAG
AGGCTNGCAAACCGGCAAAGCNAGCAGCAGCCACCACCCTAGCCTCGCAGCAACCATCTACGCATCTCGCTTTGCAGCTA
ATGCACTCCGAGGAGTTCACAGGCTCAGAAGCAGGGCCAGCCCGACAATTGTGAGATTGCCNAAGCCTCCAGAACCAGAT
TTTGCCGTCGATGAAGCTGACTAACAAGAAGAAACACACTGAAATTGCATGTATTAAGTTGTGGATTGGAGGCATCATGT
AGATTATGTACAAAATTCAAAAACAGCCAGCAGAGTTTTTGCTTGTAAAAGCCCTGTAAGTTTGTAACCACGCAAGAACC
ATCACGGAGTACATGTACTTTAGTCTTGCACTGCTAAATCCCATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis