Browse Element(s) Details


Os.17406.1.S1_at

Description gb:AK069061.1
DB_XREF= gi:32979085
TID=Os.17406.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008J21, full insert sequence.
FL= gb:AK069061.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5503011/11Cullin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54990OsAffx.26609.1.S1_at11/114+32482457..32483307hypothetical protein
LOC_Os04g55000OsAffx.4178.1.S1_at11/114+32484196..32484834cullin, putative
LOC_Os04g55009NANA4+32488693..32489123NA
LOC_Os04g55020OsAffx.22848.4.S1_at2/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.3.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.4.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55030Os.17406.1.S1_at11/114+32507274..32511697Cullin family protein, expressed
LOC_Os04g55040Os.6429.1.S1_a_at11/114+32513573..32516474Vacuolar ATP synthase subunit D 1, putative, expressed
LOC_Os04g55050NANA4+32517489..32520773Glutamyl-tRNA, putative, expressed
LOC_Os04g55060Os.13976.1.S1_at11/114+32522310..325274053-oxoacyl-synthase III B, chloroplast precursor, putative, expressed
LOC_Os04g55070OsAffx.4179.1.S1_at11/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55070OsAffx.13740.1.S1_at1/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55080Os.19084.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55080OsAffx.14423.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007049biological_processcell cycle
GO:0009639biological_processresponse to red or far red light
GO:0009733biological_processresponse to auxin stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009911biological_processpositive regulation of flower development
GO:0009960biological_processendosperm development
GO:0000151cellular_componentubiquitin ligase complex
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17406.1.S1_at--671--4891Chr04:32511367..32511391 (25 bp)
GCTTCAATCGCGCTTTTTGCCAAAT
LOC_Os04g55030
Os.17406.1.S1_at--269--2351Chr04:32511408..32511432 (25 bp)
AAAGAATAGAGTCCCTGATCGAGAG
LOC_Os04g55030
Os.17406.1.S1_at--36--6991Chr04:32511469..32511493 (25 bp)
GTACCGTTATCTTGCATAGATGCCC
LOC_Os04g55030
Os.17406.1.S1_at--104--611Chr04:32511488..32511512 (25 bp)
ATGCCCTCCCTGTCGAAACAACAGA
LOC_Os04g55030
Os.17406.1.S1_at--195--5731Chr04:32511511..32511535 (25 bp)
GACTGTCCATAAACGGGTTGCTGCT
LOC_Os04g55030
Os.17406.1.S1_at--866--6671Chr04:32511527..32511551 (25 bp)
GTTGCTGCTATGTATACCTACCCAT
LOC_Os04g55030
Os.17406.1.S1_at--103--9971Chr04:32511541..32511565 (25 bp)
TACCTACCCATGTTTCAATTTTCTT
LOC_Os04g55030
Os.17406.1.S1_at--971--9591Chr04:32511570..32511594 (25 bp)
TCATTCTCTTTAGATCTGCTGCAGA
LOC_Os04g55030
Os.17406.1.S1_at--517--8191Chr04:32511604..32511628 (25 bp)
GGCATACTAACATTTCTAGGCCTGT
LOC_Os04g55030
Os.17406.1.S1_at--757--10571Chr04:32511617..32511641 (25 bp)
TTCTAGGCCTGTTATCTTTGGTACA
LOC_Os04g55030
Os.17406.1.S1_at--1119--1871Chr04:32511652..32511676 (25 bp)
ACGATCTTATATCTTTCTGGTAATA
LOC_Os04g55030
Target Sequence 
GCTTCAATCGCGCTTTTTGCCAAATCCTGTTGTGATAAAGAAAAGAATAGAGTCCCTGATCGAGAGGGAGTTCTTGGAGA
GGGACAAGGTAGATAGGAAGATGTACCGTTATCTTGCATAGATGCCCTCCCTGTCGAAACAACAGACTGTCCATAAACGG
GTTGCTGCTATGTATACCTACCCATGTTTCAATTTTCTTCCATTCATTCTCTTTAGATCTGCTGCAGAGCCAAAGGTGGC
ATACTAACATTTCTAGGCCTGTTATCTTTGGTACAGATATAGAAAACGATCTTATATCTTTCTGGTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis