Browse Element(s) Details


OsAffx.14423.1.S1_at

Description tigr:9632.m05355
TID=OsAffx.14423.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cyclic nucleotide and calmodulin-regulated ion channel, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5508011/11Cyclic nucleotide-gated ion channel 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55030Os.17406.1.S1_at11/114+32507274..32511697Cullin family protein, expressed
LOC_Os04g55040Os.6429.1.S1_a_at11/114+32513573..32516474Vacuolar ATP synthase subunit D 1, putative, expressed
LOC_Os04g55050NANA4+32517489..32520773Glutamyl-tRNA, putative, expressed
LOC_Os04g55060Os.13976.1.S1_at11/114+32522310..325274053-oxoacyl-synthase III B, chloroplast precursor, putative, expressed
LOC_Os04g55070OsAffx.4179.1.S1_at11/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55070OsAffx.13740.1.S1_at1/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55080Os.19084.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55080OsAffx.14423.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55090Os.53360.1.S1_at11/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55090Os.53360.1.S2_at10/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55100OsAffx.4180.1.S1_at10/114+32545749..32547296expressed protein
LOC_Os04g55110Os.53825.1.S1_at11/114+32550489..32553189expressed protein
LOC_Os04g55110OsAffx.18731.1.A1_at1/114+32550489..32553189expressed protein
LOC_Os04g55120Os.48263.1.S1_at5/114+32554329..32554895hypothetical protein
LOC_Os04g55130OsAffx.4181.1.S1_at11/114+32558593..32560061expressed protein
LOC_Os04g55140Os.46785.2.S1_x_at3/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.442.1.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.30226.2.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14423.1.S1_at--605--5371Chr04:32535728..32535752 (25 bp)
GAAGACTATATTTGATCCCCAGGAA
LOC_Os04g55080
OsAffx.14423.1.S1_at--219--10871Chr04:32535773..32535797 (25 bp)
TTGGTTTTGCTTCCTATCATGTGTT
LOC_Os04g55080
OsAffx.14423.1.S1_at--294--10171Chr04:32535787..32535811 (25 bp)
TATCATGTGTTTTTGCTGTTGCCGT
LOC_Os04g55080
OsAffx.14423.1.S1_at--558--10191Chr04:32535820..32535844 (25 bp)
TATTTTTCTTCCTACCCATTATCGA
LOC_Os04g55080
OsAffx.14423.1.S1_at--105--6891Chr04:32535942..32535966 (25 bp)
GTATTTCTTCAATTTCGCACTGCTT
LOC_Os04g55080
OsAffx.14423.1.S1_at--353--2971Chr04:32536058..32536082 (25 bp)
AATGGACTTCTTTGCTTTGCTACCA
LOC_Os04g55080
OsAffx.14423.1.S1_at--304--9091Chr04:32536075..32536239 (25 bp)
TGCTACCACTTCCACAGATTGTTGT
LOC_Os04g55080
OsAffx.14423.1.S1_at--70--6251Chr04:32536262..32536286 (25 bp)
GATGGTCCAGATGTACCGTCAACAA
LOC_Os04g55080
OsAffx.14423.1.S1_at--759--9891Chr04:32536335..32536359 (25 bp)
TACGGATTTTCCCTGTGACCAAAGA
LOC_Os04g55080
OsAffx.14423.1.S1_at--445--2391Chr04:32536389..32536413 (25 bp)
AAACTGCTTGGCTTGGTGCTGCTTA
LOC_Os04g55080
OsAffx.14423.1.S1_at--671--8611Chr04:32536402..32536426 (25 bp)
TGGTGCTGCTTACTATCTTCTATGG
LOC_Os04g55080
Target Sequence 
GAAGACTATATTTGATCCCCAGGAAAAGTTTCTCTTTCAAATGAATTGGTTTTGCTTCCTATCATGTGTTTTTGCTGTTG
CCGTGGATCCACTATTTTTCTTCCTACCCATTATCGACGGCGACGACAAGTCCAGTTGCATTGGTATTGATAAAAAATTG
GCAGTGACATCAACAATAATACGAACAATTCTGGATCTGGTCTATCTTATACGTGTATTTCTTCAATTTCGCACTGCTTA
TGTTGCTCCATCTTCTCGAGTGTTTGGAACTGGTGAGCTTGTGATTGATCCAATGAGGATTGCTATTCGGTACTTAAAGA
GTTATTTTGTAATGGACTTCTTTGCTTTGCTACCACTTCCACAGATTGTTGTTTGGAGATATCTCCATACTTTGGATGGT
CCAGATGTACCGTCAACAAAAAATGCATTGGTTTGGGTTGTATTGTTTCAATATATTCCAAGGTTGCTACGGATTTTCCC
TGTGACCAAAGATTTGAAAAGGACGGCTGGTGTTTTCATTGAAACTGCTTGGCTTGGTGCTGCTTACTATCTTCTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis