Browse Element(s) Details


Os.6429.1.S1_a_at

Description gb:AK067501.1
DB_XREF= gi:32977519
TID=Os.6429.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6429 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110H12, full insert sequence.
FL= gb:AK067501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5504011/11Vacuolar ATP synthase subunit D 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55009NANA4+32488693..32489123NA
LOC_Os04g55020OsAffx.22848.4.S1_at2/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.3.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.4.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55030Os.17406.1.S1_at11/114+32507274..32511697Cullin family protein, expressed
LOC_Os04g55040Os.6429.1.S1_a_at11/114+32513573..32516474Vacuolar ATP synthase subunit D 1, putative, expressed
LOC_Os04g55050NANA4+32517489..32520773Glutamyl-tRNA, putative, expressed
LOC_Os04g55060Os.13976.1.S1_at11/114+32522310..325274053-oxoacyl-synthase III B, chloroplast precursor, putative, expressed
LOC_Os04g55070OsAffx.4179.1.S1_at11/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55070OsAffx.13740.1.S1_at1/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55080Os.19084.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55080OsAffx.14423.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55090Os.53360.1.S1_at11/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55090Os.53360.1.S2_at10/114+32539828..32543383pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6429.1.S1_a_at--193--5891Chr04:32514410..32514434 (25 bp)
GAGCGTGAGGACTTCTTCAGGCTCA
LOC_Os04g55040
Os.6429.1.S1_a_at--801--3471Chr04:32514427..32514451 (25 bp)
CAGGCTCAAGAAGATCCAGGGTTAC
LOC_Os04g55040
Os.6429.1.S1_a_at--189--6211Chr04:32514469..32514493 (25 bp)
GAGGCAGATGGCTGCAGCCAAGCAA
LOC_Os04g55040
Os.6429.1.S1_a_at--782--5071Chr04:32514482..32514506 (25 bp)
GCAGCCAAGCAATTCGCAGAGGAAC
LOC_Os04g55040
Os.6429.1.S1_a_at--156--1551Chr04:32514507..32514531 (25 bp)
AGCTTGCGGAGGAGGTTGCCCTCAA
LOC_Os04g55040
Os.6429.1.S1_a_at--133--6911Chr04:32514537..32514561 (25 bp)
GTATCTCTGTGGGTGCTGCCACCAA
LOC_Os04g55040
Os.6429.1.S1_a_at--444--7711Chr04:32514547..32514571 (25 bp)
GGGTGCTGCCACCAACATGTTGGTT
LOC_Os04g55040
Os.6429.1.S1_a_at--77--1711Chr04:32514557..32514581 (25 bp)
ACCAACATGTTGGTTGCCGGTGGAG
LOC_Os04g55040
Os.6429.1.S1_a_at--816--6011Chr04:32514579..32514603 (25 bp)
GAGAGAGGGACGAAGACATCATCTT
LOC_Os04g55040
Os.6429.1.S1_a_at--509--9611Chr04:32514597..32514621 (25 bp)
TCATCTTCTGATCATCTTCGGTCAT
LOC_Os04g55040
Os.6429.1.S1_a_at--1151--3531Chr04:32514609..32514633 (25 bp)
CATCTTCGGTCATACAGTGATTCAA
LOC_Os04g55040
Target Sequence 
GAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAA
GCAATTCGCAGAGGAACAGCTTGCGGAGGAGGTTGCCCTCAAGAGGGGTATCTCTGTGGGTGCTGCCACCAACATGTTGG
TTGCCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTCATACAGTGATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6429.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis