Browse Element(s) Details


Os.13976.1.S1_at

Description gb:AK120067.1
DB_XREF= gi:37989690
TID=Os.13976.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002L21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002L21, full insert sequence.
FL= gb:AK120067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5506011/113-oxoacyl-synthase III B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55020OsAffx.22848.4.S1_at2/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.3.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55020OsAffx.22848.4.S1_x_at1/114+32493941..32499900retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55030Os.17406.1.S1_at11/114+32507274..32511697Cullin family protein, expressed
LOC_Os04g55040Os.6429.1.S1_a_at11/114+32513573..32516474Vacuolar ATP synthase subunit D 1, putative, expressed
LOC_Os04g55050NANA4+32517489..32520773Glutamyl-tRNA, putative, expressed
LOC_Os04g55060Os.13976.1.S1_at11/114+32522310..325274053-oxoacyl-synthase III B, chloroplast precursor, putative, expressed
LOC_Os04g55070OsAffx.4179.1.S1_at11/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55070OsAffx.13740.1.S1_at1/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55080Os.19084.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55080OsAffx.14423.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55090Os.53360.1.S1_at11/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55090Os.53360.1.S2_at10/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55100OsAffx.4180.1.S1_at10/114+32545749..32547296expressed protein
LOC_Os04g55110Os.53825.1.S1_at11/114+32550489..32553189expressed protein
LOC_Os04g55110OsAffx.18731.1.A1_at1/114+32550489..32553189expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004315molecular_function3-oxoacyl-[acyl-carrier protein] synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13976.1.S1_at--691--4691Chr04:32526827..32526851 (25 bp)
GCGGCCTCAATTCCATTAGCATTAG
LOC_Os04g55060
Os.13976.1.S1_at--24--2311Chr04:32526944..32526968 (25 bp)
AAATGGTGCTAATCATTCCGCGCGG
LOC_Os04g55060
Os.13976.1.S1_at--195--10651Chr04:32526959..32526983 (25 bp)
TTCCGCGCGGTAAACATTTGCAACA
LOC_Os04g55060
Os.13976.1.S1_at--1041--4351Chr04:32526985..32527009 (25 bp)
CCAAACACCGTTCCGAGATTTCATG
LOC_Os04g55060
Os.13976.1.S1_at--417--6531Chr04:32527001..32527025 (25 bp)
GATTTCATGTACGTGGCCTAGGTTT
LOC_Os04g55060
Os.13976.1.S1_at--966--10331Chr04:32527023..32527047 (25 bp)
TTTAAGTCTTCCAGGGTCATTTGCC
LOC_Os04g55060
Os.13976.1.S1_at--234--9851Chr04:32527077..32527101 (25 bp)
TAAATCTCCGTCATTTTGCTTGCAC
LOC_Os04g55060
Os.13976.1.S1_at--702--2131Chr04:32527107..32527131 (25 bp)
ACAGTGGTGCGTCCTTATTCATATA
LOC_Os04g55060
Os.13976.1.S1_at--941--231Chr04:32527127..32527151 (25 bp)
ATATATTCCTTTGGCTCGTTACACA
LOC_Os04g55060
Os.13976.1.S1_at--91--9271Chr04:32527232..32527256 (25 bp)
TCCGGGATTGAACTTAGCTGGCCTT
LOC_Os04g55060
Os.13976.1.S1_at--12--7511Chr04:32527329..32527353 (25 bp)
GTGGTCAGCGTTCTGGCACTGATAA
LOC_Os04g55060
Target Sequence 
GCGGCCTCAATTCCATTAGCATTAGATGAGGCTGTTCGAGCTGGCAAGGTGAAGGCAGGCGATGTTATTGCAGCATCAGG
TTTTGGTGCTGGACTTACATGGGGTTCAGCTATTGTCAAATGGTGCTAATCATTCCGCGCGGTAAACATTTGCAACAACC
AAACACCGTTCCGAGATTTCATGTACGTGGCCTAGGTTTAAGTCTTCCAGGGTCATTTGCCCTTTCCCTGTCCNGACATT
GTTTTTTGGGTTAAATCTCCGTCATTTTGCTTGCACATGAAACAGTGGTGCGTCCTTATTCATATATTCCTTTGGCTCGT
TACACAGCTTGGCTGTCAGTGTGGTAACAAGTCTGGATTGTACTACTAGCTCTTTGTAGTTCAAGCGATGCGTAGAAATA
TTTAAATCCGGGATTGAACTTAGCTGGCCTTGAGGGAATATTAATATTGTAAAGTTACNTGGGCCTTCTTAACAGGGTGC
GCCCTGAAAANTTTTAATTGAACTGTGGTCAGCGTTCTGGCACTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis