Browse Element(s) Details


Os.51422.1.S1_at

Description gb:AK062763.1
DB_XREF= gi:32972781
TID=Os.51422.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-H03, full insert sequence.
FL= gb:AK062763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g552206/11CLB1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55180Os.12025.1.S1_a_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55180Os.54470.1.S1_at11/114+32582004..32588460alpha/beta hydrolase fold PF|00561 containing protein, putative, expressed
LOC_Os04g55190OsAffx.14424.1.S1_x_at11/114+32588800..32593154hypothetical protein
LOC_Os04g55200OsAffx.14425.1.S1_at11/114+32598536..32600590coatomer epsilon subunit, putative
LOC_Os04g55210Os.24690.2.S1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55210Os.24690.1.A1_s_at11/114+32601572..32606350Chloride channel-like protein CLC-g, putative, expressed
LOC_Os04g55220Os.51422.1.S1_at6/114+32607699..32612052CLB1, putative, expressed
LOC_Os04g55230Os.7692.1.S2_at11/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55230Os.7692.1.S1_at10/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55240Os.52439.1.S1_at11/114+32633073..32634031VQ motif family protein, expressed
LOC_Os04g55250Os.51420.1.S1_at11/114+32636588..32637580expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51422.1.S1_at--233--4591Chr04:32611667..32611691 (25 bp)
GCGAAAGCTTGAATCCAGTTTGGAA
LOC_Os04g55220
Os.51422.1.S1_at--710--6051Chr04:32611879..32611901 (23 bp)
GAGATTACATGGGACGGTGCATCCT
LOC_Os04g55220
Os.51422.1.S1_at--1068--5731Chr04:32611889..32611913 (25 bp)
GACGGTGCATCCTAACATTAACGAA
LOC_Os04g55220
Os.51422.1.S1_at--770--7171Chr04:32611965..32611989 (25 bp)
GTCCGGGAAACTGAACTTGCATCTG
LOC_Os04g55220
Os.51422.1.S1_at--116--2071Chr04:32611979..32612003 (25 bp)
ACTTGCATCTGAAGTGGTCGCCGCA
LOC_Os04g55220
Os.51422.1.S1_at--299--2651Chr04:32612003..32612027 (25 bp)
AACCAATCTTCCGTGATTCGCGAGA
LOC_Os04g55220
Os.51422.1.S1_at--794--10531Chr04:32612044..32612068 (25 bp)
TTCAGATGAGTTTTGTATGCGCGGA
NONE
Os.51422.1.S1_at--233--1171Chr04:32612148..32612172 (25 bp)
AGTCATCTCTTTTTTGCGGTGCAAT
NONE
Os.51422.1.S1_at--554--3971Chr04:32612164..32612188 (25 bp)
CGGTGCAATTTGATCATCCGCTGCA
NONE
Os.51422.1.S1_at--873--6431Chr04:32612175..32612199 (25 bp)
GATCATCCGCTGCACATATACATGG
NONE
Os.51422.1.S1_at--556--6791Chr04:32612207..32612231 (25 bp)
GTTATGGTGTTGATCAGCTAGCTTA
NONE
Target Sequence 
GCGAAAGCTTGAATCCAGTTTGGAACCAAACTTTTGATTTTGTTGTCGAAGATGGTTTACATGATATGCTTATGTTGGAA
GTATATGATCATGATACTTTTAGTAGAGATTACATGGGACGGTGCATCCTAACATTAACGAAGGTCTTGATCGAAGAAGA
TTACAAGGACAGCTTCAAACTGGAGGGAGNNAAGTCCGGGAAACTGAACTTGCATCTGAAGTGGTCGCCGCAACCAATCT
TCCGTGATTCGCGAGAAGAGGACAGCTTAAGATTCAGATGAGTTTTGTATGCGCGGAGAGTCATAGATGCGTGTGGGCAT
CTGGTTTCTGCGGGCCGGATGTGATGAGGGNTTCCTCCTGAAANCCTGATGAGTTCAGTCATCTCTTTTTTGCGGTGCAA
TTTGATCATCCGCTGCACATATACATGGAAGAAGAGTTATGGTGTTGATCAGCTAGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis