Browse Element(s) Details


OsAffx.26611.1.S1_x_at

Description tigr:9633.m04529
TID=OsAffx.26611.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4848911/11hypothetical protein
LOC_Os05g4844411/11hypothetical protein
LOC_Os04g553008/11hypothetical protein
LOC_Os02g216203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g338501/11Elongation factor Tu GTP binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48430NANA5+27689003..27689218hypothetical protein
LOC_Os05g48440OsAffx.28933.1.S1_x_at11/115+27692256..27693130hypothetical protein
LOC_Os05g48444OsAffx.26611.1.S1_x_at11/115+27694425..27695797hypothetical protein
LOC_Os05g48444OsAffx.26611.2.S1_at1/115+27694425..27695797hypothetical protein
LOC_Os05g48450Os.3282.2.S1_x_at10/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450Os.3282.3.S1_x_at7/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450OsAffx.16132.1.S1_at1/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48470Os.50949.2.S1_at6/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.50949.2.S1_x_at2/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.52566.1.S1_at1/115+27702618..27705079hypothetical protein
LOC_Os05g48480OsAffx.28933.1.S1_x_at9/115+27706932..27707806hypothetical protein
LOC_Os05g48489OsAffx.26611.1.S1_x_at11/115+27709101..27710473hypothetical protein
LOC_Os05g48489OsAffx.26611.2.S1_at1/115+27709101..27710473hypothetical protein
LOC_Os05g48500Os.9102.2.S1_x_at11/115+27710172..27715109expressed protein
LOC_Os05g48500OsAffx.27368.1.A1_at11/115+27710172..27715109expressed protein
LOC_Os05g48500Os.9102.1.S1_x_at11/115+27710172..27715109expressed protein
LOC_Os05g48500OsAffx.16132.1.S1_at1/115+27710172..27715109expressed protein
LOC_Os05g48510Os.5132.1.S1_at11/115+27717677..27724156phenylalanyl-tRNA synthetase beta chain, putative, expressed
LOC_Os05g48520Os.53194.1.S1_at11/115+27723814..27726424Glyoxal oxidase N-terminus family protein, expressed
LOC_Os05g48530OsAffx.25936.1.S1_s_at11/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48530OsAffx.25936.7.S1_s_at11/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48530OsAffx.25936.2.S1_x_at5/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48530OsAffx.25936.5.S1_x_at1/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48540NANA5+27733571..27733831hypothetical protein
LOC_Os05g48550Os.10827.1.S1_x_at7/115+27734223..27737766transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48550Os.46055.2.S1_x_at4/115+27734223..27737766transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0003746molecular_functiontranslation elongation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26611.1.S1_x_at--642--4175Chr07:27932796..27932820 (25 bp)
CCCATCGAGCGGCTCAAAAGCCGAT
NONE
OsAffx.26611.1.S1_x_at--893--4075Chr07:27932801..27932825 (25 bp)
CGAGCGGCTCAAAAGCCGATGTGTT
NONE
OsAffx.26611.1.S1_x_at--624--1017Chr07:27932892..27932916 (25 bp)
AGGTCAACTCCATCTACTCCACGTT
NONE
OsAffx.26611.1.S1_x_at--396--2555Chr07:27932897..27932921 (25 bp)
AACTCCATCTACTCCACGTTGCGGT
NONE
OsAffx.26611.1.S1_x_at--871--7177Chr11:26024943..26024966 (24 bp)
GTCGTCGGGCTTCTACCTACCACCG
NONE
OsAffx.26611.1.S1_x_at--173--10616Chr07:27933125..27933149 (25 bp)
TTCGCTTGCATGCACGGGCACTCAT
NONE
OsAffx.26611.1.S1_x_at--102--10735Chr07:27933130..27933154 (25 bp)
TTGCATGCACGGGCACTCATGCAGT
NONE
OsAffx.26611.1.S1_x_at--305--657Chr07:27933148..27933172 (25 bp)
ATGCAGTCAGTGGTGCTCGCGAGTA
NONE
OsAffx.26611.1.S1_x_at--526--99112Chr11:26025115..26025139 (25 bp)
TACTCCATCTCCCAACTCTTGGAGA
NONE
OsAffx.26611.1.S1_x_at--246--4711Chr11:26025121..26025145 (25 bp)
ATCTCCCAACTCTTGGAGATCCTCT
NONE
OsAffx.26611.1.S1_x_at--855--8853Chr07:27933256..27933280 (25 bp)
TGATGCGGACGTGGCGCAGATGCGC
NONE
Target Sequence 
CCCATCGAGCGGCTCAAAAGCCGATGTGTTNAGGTGTCCCCGAGCTTCGCCTCTCCTCCGCAGAGGCGAACNCGCNGCTC
CNCCGCATCGTCTTCNAGGTCAACTCCATCTACTCCACGTTGCGGTCGCANCGTCCTCGATGCATGCGCNCTTTTCCCCA
ACGCTTGCCACCGCCAAGCTTNTTGTTCGCTGCCAGCCTTCTCCCCACCNATCGCCNGGTGNCGTCGTCGGGCTTCTACC
TACCACCGCCACCCAACAACCACCACCCTTCTCCCTGCTGGTCACCGGCCACCACACACCTCTCCCGCGATTCAGCGNCT
GGCNTCCTCTTCGCTTGCATGCACGGGCACTCATGCAGTCAGTGGTGCTCGCGAGTATGCTCAGGCNTCGCAACNTACTC
CATCTCCCAACTCTTGGAGATCCTCTNNCCAATCCCGACGGTGTNGCTGACNTGCGANCATGATGCGGACGTGGCGCAGA
TGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26611.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis