Browse Element(s) Details


Os.9102.1.S1_x_at

Description gb:AK066898.1
DB_XREF= gi:32976916
TID=Os.9102.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092G17, full insert sequence.
FL= gb:AK073985.1 gb:AK066898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4850011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48430NANA5+27689003..27689218hypothetical protein
LOC_Os05g48440OsAffx.28933.1.S1_x_at11/115+27692256..27693130hypothetical protein
LOC_Os05g48444OsAffx.26611.1.S1_x_at11/115+27694425..27695797hypothetical protein
LOC_Os05g48444OsAffx.26611.2.S1_at1/115+27694425..27695797hypothetical protein
LOC_Os05g48450Os.3282.2.S1_x_at10/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450Os.3282.3.S1_x_at7/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450OsAffx.16132.1.S1_at1/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48470Os.50949.2.S1_at6/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.50949.2.S1_x_at2/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.52566.1.S1_at1/115+27702618..27705079hypothetical protein
LOC_Os05g48480OsAffx.28933.1.S1_x_at9/115+27706932..27707806hypothetical protein
LOC_Os05g48489OsAffx.26611.1.S1_x_at11/115+27709101..27710473hypothetical protein
LOC_Os05g48489OsAffx.26611.2.S1_at1/115+27709101..27710473hypothetical protein
LOC_Os05g48500Os.9102.2.S1_x_at11/115+27710172..27715109expressed protein
LOC_Os05g48500OsAffx.27368.1.A1_at11/115+27710172..27715109expressed protein
LOC_Os05g48500Os.9102.1.S1_x_at11/115+27710172..27715109expressed protein
LOC_Os05g48500OsAffx.16132.1.S1_at1/115+27710172..27715109expressed protein
LOC_Os05g48510Os.5132.1.S1_at11/115+27717677..27724156phenylalanyl-tRNA synthetase beta chain, putative, expressed
LOC_Os05g48520Os.53194.1.S1_at11/115+27723814..27726424Glyoxal oxidase N-terminus family protein, expressed
LOC_Os05g48530OsAffx.25936.1.S1_s_at11/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48530OsAffx.25936.7.S1_s_at11/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48530OsAffx.25936.2.S1_x_at5/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48530OsAffx.25936.5.S1_x_at1/115+27728963..27731944transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48540NANA5+27733571..27733831hypothetical protein
LOC_Os05g48550Os.10827.1.S1_x_at7/115+27734223..27737766transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48550Os.46055.2.S1_x_at4/115+27734223..27737766transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g48560OsAffx.15151.1.S1_at8/115+27740076..27744619expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9102.1.S1_x_at--312--6191Chr05:27713125..27713149 (25 bp)
GAGGCTCCTTTTGTGCATTACTATC
LOC_Os05g48500
Os.9102.1.S1_x_at--562--9011Chr05:27713202..27713226 (25 bp)
TGCACCACCGTTTGGGAACTTTTGG
LOC_Os05g48500
Os.9102.1.S1_x_at--1064--2151Chr05:27713229..27713253 (25 bp)
ACAGCCAGGGAGTTCTTCTGTTCCT
LOC_Os05g48500
Os.9102.1.S1_x_at--801--3871Chr05:27713246..27713270 (25 bp)
CTGTTCCTGTGGCAGATGGATCCAA
LOC_Os05g48500
Os.9102.1.S1_x_at--813--5391Chr05:27713277..27713301 (25 bp)
GAAGCCAGTCTCTAGTAAACGGAAA
LOC_Os05g48500
Os.9102.1.S1_x_at--390--4772Chr05:27713344..27713368 (25 bp)
GCTGCTGAGCAACCTGATGCATTTA
LOC_Os05g48500
Os.9102.1.S1_x_at--890--8311Chr05:27713470..27713494 (25 bp)
GGCTCAAACTCTTGGTTGGTTGCAC
LOC_Os05g48500
Os.9102.1.S1_x_at--1041--6191Chr05:27713586..27713610 (25 bp)
GAGGCAGCCAAGTTTCTCAGGAAGT
LOC_Os05g48500
Os.9102.1.S1_x_at--728--8151Chr05:27713638..27713662 (25 bp)
GGAAATCCTTTGTCATTGCAAGCAT
LOC_Os05g48500
Os.9102.1.S1_x_at--871--10771Chr05:27713669..27713693 (25 bp)
TTGTTGCTGTGCCATATCAAGTCCC
LOC_Os05g48500
Os.9102.1.S1_x_at--772--10151Chr05:27713683..27713707 (25 bp)
TATCAAGTCCCGTCTCAGGTTTCAG
LOC_Os05g48500
Target Sequence 
GAGGCTCCTTTTGTGCATTACTATCAAACAAATGCAGAGAACCAAGAACACAGTAGCAAGCAGAGACACAGCCCTGCTGC
ACCACCGTTTGGGAACTTTTGGGGACAGCCAGGGAGTTCTTCTGTTCCTGTGGCAGATGGATCCAATGAACAGAAGCCAG
TCTCTAGTAAACGGAAATTACTTTCTGAGGAGATAAGTTTTCAGAAGAAACCTAATACAGCTGCTGAGCAACCTGATGCA
TTTAGTAAGAGCTCTGACGGTGGTGTAAAAAACGCTCCTATTTCAATTAGCACGGATGATGGTTCAACAGGTGAAAACGA
GGATGTTGCAGAATCAGAAGCAGAAGGCTCAAACTCTTGGTTGGTTGCACAGCGTGAAGACAGTGCTAAGGGATCTGTTG
TCNATAGAGGATCTGACAGAAAACGATCCAGTGATGATGCTGCAGTTGGTTTTCAAGGAAAGAGGCAGCCAAGTTTCTCA
GGAAGTGAATCCAGCTCTGGAAAATTGCCACAAGGAAATCCTTTGTCATTGCAAGCATCAAATGTTGTTGCTGTGCCATA
TCAAGTCCCGTCTCAGGTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9102.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis