Browse Element(s) Details


OsAffx.28933.1.S1_x_at

Description tigr:9633.m04522
TID=OsAffx.28933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT004513 At1g30760T5I8_22
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4844011/11hypothetical protein
LOC_Os05g484809/11hypothetical protein
LOC_Os05g284905/11hypothetical protein
LOC_Os08g413504/11hypothetical protein
LOC_Os07g467402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48410Os.8883.1.S1_at11/115+27672841..2767585750S ribosomal protein L21, mitochondrial precursor, putative, expressed
LOC_Os05g48416Os.9873.1.S1_at11/115+27676281..27680377expressed protein
LOC_Os05g48422Os.49122.1.S1_at11/115+27681587..27683386ribosomal protein, putative, expressed
LOC_Os05g48430NANA5+27689003..27689218hypothetical protein
LOC_Os05g48440OsAffx.28933.1.S1_x_at11/115+27692256..27693130hypothetical protein
LOC_Os05g48444OsAffx.26611.1.S1_x_at11/115+27694425..27695797hypothetical protein
LOC_Os05g48444OsAffx.26611.2.S1_at1/115+27694425..27695797hypothetical protein
LOC_Os05g48450Os.3282.2.S1_x_at10/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450Os.3282.3.S1_x_at7/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450OsAffx.16132.1.S1_at1/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48470Os.50949.2.S1_at6/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.50949.2.S1_x_at2/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.52566.1.S1_at1/115+27702618..27705079hypothetical protein
LOC_Os05g48480OsAffx.28933.1.S1_x_at9/115+27706932..27707806hypothetical protein
LOC_Os05g48489OsAffx.26611.1.S1_x_at11/115+27709101..27710473hypothetical protein
LOC_Os05g48489OsAffx.26611.2.S1_at1/115+27709101..27710473hypothetical protein
LOC_Os05g48500Os.9102.2.S1_x_at11/115+27710172..27715109expressed protein
LOC_Os05g48500OsAffx.27368.1.A1_at11/115+27710172..27715109expressed protein
LOC_Os05g48500Os.9102.1.S1_x_at11/115+27710172..27715109expressed protein
LOC_Os05g48500OsAffx.16132.1.S1_at1/115+27710172..27715109expressed protein
LOC_Os05g48510Os.5132.1.S1_at11/115+27717677..27724156phenylalanyl-tRNA synthetase beta chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28933.1.S1_x_at--116--2534Chr07:27934899..27934923 (25 bp)
AACTTCTCCGCGTCGTAGTGCAGAA
NONE
OsAffx.28933.1.S1_x_at--3--1135Chr08:25991839..25991962 (25 bp)
AGTCCCTGTACCTCGTCCATGCTCT
LOC_Os08g41350
OsAffx.28933.1.S1_x_at--455--4275Chr08:25991843..25991966 (25 bp)
CCTGTACCTCGTCCATGCTCTACTT
LOC_Os08g41350
OsAffx.28933.1.S1_x_at--159--1331Chr05:27692683..27692707 (25 bp)
AGAGGCACCAGCAAGCAGGGCAAGT
LOC_Os05g48440
OsAffx.28933.1.S1_x_at--1107--6191Chr05:27692682..27692706 (25 bp)
GAGGCACCAGCAAGCAGGGCAAGTA
LOC_Os05g48440
OsAffx.28933.1.S1_x_at--747--932Chr05:27692681..27692705 (25 bp)
AGGCACCAGCAAGCAGGGCAAGTAC
LOC_Os05g48440
OsAffx.28933.1.S1_x_at--484--3372Chr05:27707354..27707378 (25 bp)
CACCAGCAAGCAGGGCAAGTACTTG
LOC_Os05g48480
OsAffx.28933.1.S1_x_at--540--5716Chr08:25992052..25992076 (25 bp)
GACTCCGTACGTCCAAGAACATGCC
LOC_Os08g41350
OsAffx.28933.1.S1_x_at--312--2756Chr08:25992066..25992090 (25 bp)
AAGAACATGCCCAGCCAAGTCTGGG
LOC_Os08g41350
OsAffx.28933.1.S1_x_at--353--6033Chr05:16600083..16600107 (25 bp)
GAGATGGTCCGCGTCGCGCCAGCGG
LOC_Os05g28490
OsAffx.28933.1.S1_x_at--199--3412Chr05:27707032..27707056 (25 bp)
CAGCAGCCATAGCTGCCGTCACAGG
LOC_Os05g48480
Target Sequence 
AACTTCTCCGCGTCGTAGTGCAGAACCAGAACGCGCAGTTCGAGTCCCTGTACCTCGTCCATGCTCTACTTCGCGTTCTA
CGGCACGGGGAAGCCATTGGAGATGCTCCTGGACAGAGGCACCAGCAAGCAGGGCAAGTACTTGAAGGCCAAGTCCGACT
CCGTACGTCCAAGAACATGCCCAGCCAAGTCTGGGAGACCACCTGGAGCTGGCTCCTCAAGGACGGTGCCGGGCTGCTCA
TCCTCGACCCCTACGGCGGCGAGATGGTCCGCGTCGCGCCAGCGGTGACACCGTTCCCGCACCGGCAGGCGCTCTACAAC
ATCCAGTACTATGGGTTCTGGTCGAATAGCGGGGCGGCGGCGGCGGAGAAGCACATGGGCTGGATGAGAGGGCTCTACGG
TGAGATGGAGCCGTACGTGTCCAAGAACCCCAGGGGCGGCGCAGCAGCCATAGCTGCCGTCACAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28933.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis