Browse Element(s) Details


Os.49122.1.S1_at

Description gb:AK073857.1
DB_XREF= gi:32983880
TID=Os.49122.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074P11, full insert sequence.
FL= gb:AK073857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4842211/11ribosomal protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48390Os.15185.1.S1_s_at11/115+27656755..27664453Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os05g48400OsAffx.4651.1.S1_at11/115+27666072..27666717hypothetical protein
LOC_Os05g48410Os.8883.1.S1_at11/115+27672841..2767585750S ribosomal protein L21, mitochondrial precursor, putative, expressed
LOC_Os05g48416Os.9873.1.S1_at11/115+27676281..27680377expressed protein
LOC_Os05g48422Os.49122.1.S1_at11/115+27681587..27683386ribosomal protein, putative, expressed
LOC_Os05g48430NANA5+27689003..27689218hypothetical protein
LOC_Os05g48440OsAffx.28933.1.S1_x_at11/115+27692256..27693130hypothetical protein
LOC_Os05g48444OsAffx.26611.1.S1_x_at11/115+27694425..27695797hypothetical protein
LOC_Os05g48444OsAffx.26611.2.S1_at1/115+27694425..27695797hypothetical protein
LOC_Os05g48450Os.3282.2.S1_x_at10/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450Os.3282.3.S1_x_at7/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450OsAffx.16132.1.S1_at1/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48470Os.50949.2.S1_at6/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.50949.2.S1_x_at2/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.52566.1.S1_at1/115+27702618..27705079hypothetical protein
LOC_Os05g48480OsAffx.28933.1.S1_x_at9/115+27706932..27707806hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49122.1.S1_at--34--291Chr05:27682052..27682076 (25 bp)
ATAGGTTTTATTCTCTATCTCCTGA
LOC_Os05g48422
Os.49122.1.S1_at--132--5471Chr05:27681936..27681960 (25 bp)
GAACTATGCCACTGTCAAGTTTTTG
LOC_Os05g48422
Os.49122.1.S1_at--1034--4371Chr05:27681884..27681908 (25 bp)
CCAATCTACCGCAGAATGTTCTACT
LOC_Os05g48422
Os.49122.1.S1_at--1058--10791Chr05:27681815..27681839 (25 bp)
TTGTTAGCTTACTAGCCTGACTGCC
LOC_Os05g48422
Os.49122.1.S1_at--858--5711Chr05:27681797..27681821 (25 bp)
GACTGCCTGAGCCTTCAGGTTAAAG
LOC_Os05g48422
Os.49122.1.S1_at--438--7511Chr05:27681742..27681766 (25 bp)
GTGGTTCGCATCAATTTTGTGATCA
LOC_Os05g48422
Os.49122.1.S1_at--665--271Chr05:27681710..27681734 (25 bp)
ATATGTCTCAGTTGTTGTCTTCCCT
LOC_Os05g48422
Os.49122.1.S1_at--478--8731Chr05:27681695..27681719 (25 bp)
TGTCTTCCCTGAATTACTCATCTAG
LOC_Os05g48422
Os.49122.1.S1_at--412--9111Chr05:27681666..27681690 (25 bp)
TGCTGTACACTTGGAACCCAGTTTC
LOC_Os05g48422
Os.49122.1.S1_at--153--8651Chr05:27681632..27681656 (25 bp)
TGGGCTGGGCCATTTGTACTCTCTT
LOC_Os05g48422
Os.49122.1.S1_at--237--7011Chr05:27681617..27681641 (25 bp)
GTACTCTCTTACTTTGCATGACTTG
LOC_Os05g48422
Target Sequence 
ATAGGTTTTATTCTCTATCTCCTGAGAGATGCTTGTGATATTGGTTGATCGACAGTGTCGTGATGTTCATNGTGTTGATT
AGCTGGGCTAATCTGATAGTTTATCTGCTGGCAGAAGAACTATGCCACTGTCAAGTTTTTGGTAGCCTTGTAGTACTTTA
TAAGATCTCCAATCTACCGCAGAATGTTCTACTTTTGTGTGCACTANAGGTGTCTTCAAAAGTTGTATCTTTTGTTTTTG
TTAGCTTACTAGCCTGACTGCCTGAGCCTTCAGGTTAAAGATAGTATGGTAAAACTGTTTCTGGCTNCATGTGGTTCGCA
TCAATTTTGTGATCATCTAAGAATATGTCTCAGTTGTTGTCTTCCCTGAATTACTCATCTAGCATATGCTGTACACTTGG
AACCCAGTTTCAATAGGAGCTGGGCTGGGCCATTTGTACTCTCTTACTTTGCATGACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis