Browse Element(s) Details


Os.8883.1.S1_at

Description gb:AK068460.1
DB_XREF= gi:32978478
TID=Os.8883.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153H24, full insert sequence.
FL= gb:AK105327.1 gb:AK068460.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4841011/1150S ribosomal protein L21, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48370Os.15774.1.S1_at11/115+27646303..27648140expressed protein
LOC_Os05g48380Os.50544.1.S1_at11/115+27650625..27655048ubiquitin-conjugating enzyme E2, putative, expressed
LOC_Os05g48390Os.15185.1.S1_s_at11/115+27656755..27664453Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os05g48400OsAffx.4651.1.S1_at11/115+27666072..27666717hypothetical protein
LOC_Os05g48410Os.8883.1.S1_at11/115+27672841..2767585750S ribosomal protein L21, mitochondrial precursor, putative, expressed
LOC_Os05g48416Os.9873.1.S1_at11/115+27676281..27680377expressed protein
LOC_Os05g48422Os.49122.1.S1_at11/115+27681587..27683386ribosomal protein, putative, expressed
LOC_Os05g48430NANA5+27689003..27689218hypothetical protein
LOC_Os05g48440OsAffx.28933.1.S1_x_at11/115+27692256..27693130hypothetical protein
LOC_Os05g48444OsAffx.26611.1.S1_x_at11/115+27694425..27695797hypothetical protein
LOC_Os05g48444OsAffx.26611.2.S1_at1/115+27694425..27695797hypothetical protein
LOC_Os05g48450Os.3282.2.S1_x_at10/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450Os.3282.3.S1_x_at7/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450OsAffx.16132.1.S1_at1/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003700molecular_functiontranscription factor activity
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8883.1.S1_at--645--10451Chr05:27673453..27673477 (25 bp)
TTACCGTCGAACAAAGGGCCATCGT
LOC_Os05g48410
Os.8883.1.S1_at--700--1271Chr05:27673274..27673298 (25 bp)
AGATAAGTCAGAGGCCACTGCTGTT
LOC_Os05g48410
Os.8883.1.S1_at--1146--9691Chr05:27673171..27673195 (25 bp)
TCAAATCTTGATGCGGCGTGCTGTT
LOC_Os05g48410
Os.8883.1.S1_at--958--4651Chr05:27673156..27673180 (25 bp)
GCGTGCTGTTGCTTATTGTCAGTCA
LOC_Os05g48410
Os.8883.1.S1_at--1083--10671Chr05:27673084..27673108 (25 bp)
TTGGGAACGGGCCACTCAAGCTATG
LOC_Os05g48410
Os.8883.1.S1_at--1032--10131Chr05:27673063..27673087 (25 bp)
TATGCCCTTTCTCACAATGCCAATG
LOC_Os05g48410
Os.8883.1.S1_at--49--10571Chr05:27672971..27672995 (25 bp)
TTCTTTCTCCATTTACTAGCGTACC
LOC_Os05g48410
Os.8883.1.S1_at--1039--9991Chr05:27672955..27672979 (25 bp)
TAGCGTACCTCCTTGAATGTGTTCC
LOC_Os05g48410
Os.8883.1.S1_at--995--2971Chr05:27672940..27672964 (25 bp)
AATGTGTTCCAATGCATCAGTGCCA
LOC_Os05g48410
Os.8883.1.S1_at--456--411Chr05:27672925..27672949 (25 bp)
ATCAGTGCCATGTATACCGTTCTAG
LOC_Os05g48410
Os.8883.1.S1_at--525--5571Chr05:27672883..27672907 (25 bp)
GAAAGTTTGTGGTTCCCATCTATTT
LOC_Os05g48410
Target Sequence 
TTACCGTCGAACAAAGGGCCATCGTCAGGAATTGACAAAGCTGAGAATAACCAACATTGAAGGAATAGATAAGTCAGAGG
CCACTGCTGTTGNCTGCTTAAANNTTAAGATGAATAATGNNAAGGAANCATGGCTTNNATGCCCAGGCAGTCCNTTCATA
CTGGTTTTAGTGTCCAATCAAATCTTGATGCGGCGTGCTGTTGCTTATTGTCAGTCACTGATTGAAAGAACCATATCTGA
AGGTCNNTGTCTATGTATCCACATNTTGGGAACGGGCCACTCAAGCTATGCCCTTTCTCACAATGCCAATGTCTTGACCA
GTTTGGATATTCTGATGTGGATCACATCTTGTAGTTACAGCCAAACTAACTTTTTGTTTTCTTTCTCCATTTACTAGCGT
ACCTCCTTGAATGTGTTCCAATGCATCAGTGCCATGTATACCGTTCTAGCCATGAATAATGAAACTGAAAGTTTGTGGTT
CCCATCTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis