Browse Element(s) Details


Os.50544.1.S1_at

Description gb:AK121717.1
DB_XREF= gi:37991340
TID=Os.50544.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079L01, full insert sequence.
FL= gb:AK121717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4838011/11ubiquitin-conjugating enzyme E2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48340Os.5594.1.S1_at11/115+27629080..27634433proteasome, putative, expressed
LOC_Os05g48350NANA5+27636556..27636801hypothetical protein
LOC_Os05g48360Os.37910.1.S1_at11/115+27640132..27644189MAC/Perforin domain containing protein, expressed
LOC_Os05g48370Os.15774.1.S1_at11/115+27646303..27648140expressed protein
LOC_Os05g48380Os.50544.1.S1_at11/115+27650625..27655048ubiquitin-conjugating enzyme E2, putative, expressed
LOC_Os05g48390Os.15185.1.S1_s_at11/115+27656755..27664453Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os05g48400OsAffx.4651.1.S1_at11/115+27666072..27666717hypothetical protein
LOC_Os05g48410Os.8883.1.S1_at11/115+27672841..2767585750S ribosomal protein L21, mitochondrial precursor, putative, expressed
LOC_Os05g48416Os.9873.1.S1_at11/115+27676281..27680377expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50544.1.S1_at--635--291Chr05:27651196..27651220 (25 bp)
ATAGCTTGCAGAGCCTATCTGGACG
LOC_Os05g48380
Os.50544.1.S1_at--1116--1671Chr05:27651185..27651209 (25 bp)
AGCCTATCTGGACGGTGCCCAAGTT
LOC_Os05g48380
Os.50544.1.S1_at--1011--9371Chr05:27651129..27651153 (25 bp)
TCGATGAGGGCGACAAGAGCTGCTC
LOC_Os05g48380
Os.50544.1.S1_at--1151--9771Chr05:27651095..27651119 (25 bp)
TAAGAGCGCGCTGAAGAGATTATTT
LOC_Os05g48380
Os.50544.1.S1_at--45--5491Chr05:27651067..27651091 (25 bp)
GAACTTCTGATGGAATTCACTGTCA
LOC_Os05g48380
Os.50544.1.S1_at--1068--6111Chr05:27651034..27651058 (25 bp)
GAGTGTGACAAATTCCTAGCTGAGA
LOC_Os05g48380
Os.50544.1.S1_at--298--10031Chr05:27650990..27651014 (25 bp)
TAGAGCTCCAGCAGACACCACATTG
LOC_Os05g48380
Os.50544.1.S1_at--776--9751Chr05:27650959..27650983 (25 bp)
TAAGTTGATAGCCTCGCGTGGTCGA
LOC_Os05g48380
Os.50544.1.S1_at--832--2591Chr05:27650814..27650838 (25 bp)
AACGACATATCCGTGTTTGTATTTA
LOC_Os05g48380
Os.50544.1.S1_at--818--3571Chr05:27650679..27650703 (25 bp)
CATATTGAACTCTTATCAGCAGATC
LOC_Os05g48380
Os.50544.1.S1_at--571--1291Chr05:27650659..27650683 (25 bp)
AGATCCCTGCTTCTACGCTGGAATT
LOC_Os05g48380
Target Sequence 
ATAGCTTGCAGAGCCTATCTGGACGGTGCCCAAGTTGGATGTCTTGTTGGAAATGGTGTGCAGGATGTCGATGAGGGCGA
CAAGAGCTGCTCGGCGAGGTTTAAGAGCGCGCTGAAGAGATTATTTGAGGAACTTCTGATGGAATTCACTGTCAAGGGAG
CAGAGTGTGACAAATTCCTAGCTGAGAAGGCCAAAGCCGCGGCTTCTAGAGCTCCAGCAGACACCACATTGAGGCTATAA
GTTGATAGCCTCGCGTGGTCGATAGACGGGAGTAATAATTTCGCTATTGAAATAGGATCCTCAACTCATTATGCCCCCGG
ATTCTAACCGTTTCCTGGAAGTAGCCTATGTAAATAGCCTTGTAGTTGCCCCGGTAAACATAAACGACATATCCGTGTTT
GTATTTAGGGGCTATATATCTTTTTTCCCCATAGCATGAGGGTGTCGTCTACCTGCGGAGCCTTAATCCGCTGTGTATGT
GATTGACGCCACACCATCTTGGCCTTCTGAAGAATATCATATTGAACTCTTATCAGCAGATCCCTGCTTCTACGCTGGAA
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis