Browse Element(s) Details


Os.37910.1.S1_at

Description gb:AK069566.1
DB_XREF= gi:32979590
TID=Os.37910.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023023J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023J10, full insert sequence.
FL= gb:AK069566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4836011/11MAC/Perforin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48320Os.11497.1.S1_at11/115+27616481..2761856960S ribosomal protein L37a, putative, expressed
LOC_Os05g48330OsAffx.23718.2.S1_x_at11/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48330OsAffx.23718.1.S1_x_at3/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48340Os.5594.1.S1_at11/115+27629080..27634433proteasome, putative, expressed
LOC_Os05g48350NANA5+27636556..27636801hypothetical protein
LOC_Os05g48360Os.37910.1.S1_at11/115+27640132..27644189MAC/Perforin domain containing protein, expressed
LOC_Os05g48370Os.15774.1.S1_at11/115+27646303..27648140expressed protein
LOC_Os05g48380Os.50544.1.S1_at11/115+27650625..27655048ubiquitin-conjugating enzyme E2, putative, expressed
LOC_Os05g48390Os.15185.1.S1_s_at11/115+27656755..27664453Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os05g48400OsAffx.4651.1.S1_at11/115+27666072..27666717hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0008219biological_processcell death
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37910.1.S1_at--24--5411Chr05:27641283..27641307 (25 bp)
GAAGCTCTGCATCGAAGGCGGCAAA
LOC_Os05g48360
Os.37910.1.S1_at--993--4653Chr05:21876736..21876756 (21 bp)
GCGGCAAAGTTGCACTCAAGGTCAA
NONE
Os.37910.1.S1_at--749--9731Chr05:27641251..27641275 (25 bp)
TCAAGGTCAAGTACTCGCTGCTCAT
LOC_Os05g48360
Os.37910.1.S1_at--619--9091Chr05:27641233..27641257 (25 bp)
TGCTCATCGCGGAGGTGCTAGACTA
LOC_Os05g48360
Os.37910.1.S1_at--121--4851Chr05:27641217..27641241 (25 bp)
GCTAGACTACCCTGAGTGACTGTTG
LOC_Os05g48360
Os.37910.1.S1_at--242--7331Chr05:27641174..27641198 (25 bp)
GTGCATCTTTTTGGCTCGTTTGTGA
LOC_Os05g48360
Os.37910.1.S1_at--288--4811Chr05:27641161..27641185 (25 bp)
GCTCGTTTGTGATGCTGTTGTGTAC
LOC_Os05g48360
Os.37910.1.S1_at--1053--9411Chr05:27640414..27640438 (25 bp)
TCGTCCAATCGATGGCTAGTTGCAA
LOC_Os05g48360
Os.37910.1.S1_at--1029--511Chr05:27640337..27640361 (25 bp)
ATCGAGATCTCCTATATGTTTTTTG
LOC_Os05g48360
Os.37910.1.S1_at--196--8611Chr05:27640298..27640322 (25 bp)
TGGTGCACCCACAAGGAGACACGGT
LOC_Os05g48360
Os.37910.1.S1_at--300--5631Chr05:27640281..27640305 (25 bp)
GACACGGTCGTGGAATATTTCATCT
LOC_Os05g48360
Target Sequence 
GAAGCTCTGCATCGAAGGCGGCAAAGTTGCACTCAAGGTCAAGTACTCGCTGCTCATCGCGGAGGTGCTAGACTACCCTG
AGTGACTGTTGAGAAGAACTGCACGGTGTGTGCATCTTTTTGGCTCGTTTGTGATGCTGTTGTGTACAGTACAGTACAGT
ACAGGATGTAACTGGTTCAATGGAAGGAGAGAGAGAAGACACCGGCATGGTTGAGGGTCGAAGAGGAGACGAGATCGTCC
AATCGATGGCTAGTTGCAAGCGCATGATTAGTTATTTATGTAGTTCACAAATTTGTTGAATAAGGGGTTGAATCGAGATC
TCCTATATGTTTTTTGTTCTAGGGTTTGAATGGTGCACCCACAAGGAGACACGGTCGTGGAATATTTCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis