Browse Element(s) Details


OsAffx.23718.2.S1_x_at

Description tigr:9633.m04510
TID=OsAffx.23718.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Eukaryotic aspartyl protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4833011/11Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g487504/11aspartyl protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48280OsAffx.15144.1.S1_at6/115+27590665..27596587expressed protein
LOC_Os05g48290OsAffx.15145.1.S1_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290OsAffx.15145.1.S1_x_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290Os.8383.1.S1_at8/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48300Os.56339.1.S1_at10/115+27606734..27608169expressed protein
LOC_Os05g48310OsAffx.27366.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48310Os.37945.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48320Os.11497.1.S1_at11/115+27616481..2761856960S ribosomal protein L37a, putative, expressed
LOC_Os05g48330OsAffx.23718.2.S1_x_at11/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48330OsAffx.23718.1.S1_x_at3/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48340Os.5594.1.S1_at11/115+27629080..27634433proteasome, putative, expressed
LOC_Os05g48350NANA5+27636556..27636801hypothetical protein
LOC_Os05g48360Os.37910.1.S1_at11/115+27640132..27644189MAC/Perforin domain containing protein, expressed
LOC_Os05g48370Os.15774.1.S1_at11/115+27646303..27648140expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23718.2.S1_x_at--633--9951Chr05:27619382..27619406 (25 bp)
TACGCCGTGGCGGTCGACTCTGTCT
LOC_Os05g48330
OsAffx.23718.2.S1_x_at--908--5691Chr05:27619367..27619391 (25 bp)
GACTCTGTCTCCGTCGACGGCGTGG
LOC_Os05g48330
OsAffx.23718.2.S1_x_at--1057--2091Chr05:27619336..27619360 (25 bp)
ACATCCCAGCCGAGGTGTGGGACGT
LOC_Os05g48330
OsAffx.23718.2.S1_x_at--300--532Chr01:28287778..28287800 (23 bp)
ATCGACTCCGGCACGAGCCTGACGG
LOC_Os01g48750
OsAffx.23718.2.S1_x_at--676--6712Chr01:28287884..28287908 (25 bp)
GTTCGACTACTGCTACAACTGGACG
LOC_Os01g48750
OsAffx.23718.2.S1_x_at--883--9071Chr05:27619172..27619196 (25 bp)
TGCTACAACTGGACGGCCCGCGGCG
LOC_Os05g48330
OsAffx.23718.2.S1_x_at--340--1672Chr01:28287982..28288006 (25 bp)
AGCCGCCGGCGAAGAGCTACGTGAT
LOC_Os01g48750
OsAffx.23718.2.S1_x_at--627--2772Chr01:28287993..28288017 (25 bp)
AAGAGCTACGTGATCGACGCGGCGC
LOC_Os01g48750
OsAffx.23718.2.S1_x_at--1130--7711Chr05:27619006..27619030 (25 bp)
GGGTGTCCGTGATCGGCAACATCCT
LOC_Os05g48330
OsAffx.23718.2.S1_x_at--902--1511Chr05:27618979..27619003 (25 bp)
AGCAGGAGCACCTCTGGGAGTTCGA
LOC_Os05g48330
OsAffx.23718.2.S1_x_at--284--1231Chr05:27618961..27618985 (25 bp)
AGTTCGACCTCAACAATCGGTGGCT
LOC_Os05g48330
Target Sequence 
TACGCCGTGGCGGTCGACTCTGTCTCCGTCGACGGCGTGGCGCTCGACATCCCAGCCGAGGTGTGGGACGTCGGCAGCAA
CGGCGGCACCATCATCGACTCCGGCACGAGCCTGACGGTGCTCGCCACGCCGGCGTACAAGGCGGTGGTGGCGGCGCTGA
GCGAGCAGCTCGCCGGGCTGCCGCGCGTGGCCATGGACCCGTTCGACTACTGCTACAACTGGACGGCCCGCGGCGACGGC
GGCGGCGACCTCGCCGTGCCGAAGCTGGCGGTGCAGTTCGCCGGGTCGGCGAGGCTGGAGCCGCCGGCGAAGAGCTACGT
GATCGACGCGGCGCCCGGCGTGAAGTGCATCGGGGTGCAGGAGGGGGCGTGGCCGGGGGTGTCCGTGATCGGCAACATCC
TGCAGCAGGAGCACCTCTGGGAGTTCGACCTCAACAATCGGTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23718.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis