Browse Element(s) Details


Os.8383.1.S1_at

Description gb:AK059663.1
DB_XREF= gi:32969681
TID=Os.8383.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-E04, full insert sequence.
FL= gb:AK059663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g482908/11T-complex protein 1, beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48260OsAffx.27365.1.S1_at11/115+27577574..27581528condensation domain-containing protein, putative, expressed
LOC_Os05g48270Os.25562.1.S1_at11/115+27583058..27586077auxin-responsive protein, putative, expressed
LOC_Os05g48280OsAffx.15144.1.S1_at6/115+27590665..27596587expressed protein
LOC_Os05g48290OsAffx.15145.1.S1_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290OsAffx.15145.1.S1_x_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290Os.8383.1.S1_at8/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48300Os.56339.1.S1_at10/115+27606734..27608169expressed protein
LOC_Os05g48310OsAffx.27366.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48310Os.37945.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48320Os.11497.1.S1_at11/115+27616481..2761856960S ribosomal protein L37a, putative, expressed
LOC_Os05g48330OsAffx.23718.2.S1_x_at11/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48330OsAffx.23718.1.S1_x_at3/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48340Os.5594.1.S1_at11/115+27629080..27634433proteasome, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8383.1.S1_at--296--6271Chr05:27604850..27604874 (25 bp)
GATGTGTCTGATATTTGTGTTCTAA
LOC_Os05g48290
Os.8383.1.S1_at--948--10751Chr05:27604919..27604943 (25 bp)
TTGTAGACACATATGGGACGGCCGG
LOC_Os05g48290
Os.8383.1.S1_at--667--5731Chr05:27604935..27604959 (25 bp)
GACGGCCGGGTCTGTATTATCATGA
LOC_Os05g48290
Os.8383.1.S1_at--709--1551Chr05:27604961..27604985 (25 bp)
AGCTTTGTCCTAACAGCGGAACACT
LOC_Os05g48290
Os.8383.1.S1_at--523--4691Chr05:27604976..27605000 (25 bp)
GCGGAACACTTTGAATGGGATTCTT
LOC_Os05g48290
Os.8383.1.S1_at--581--7931Chr05:27604993..27605017 (25 bp)
GGATTCTTATTTGCAGCTTTACTCA
LOC_Os05g48290
Os.8383.1.S1_at--130--9911Chr05:27605012..27605036 (25 bp)
TACTCATGTGCGCTTGGCTCAAAAT
LOC_Os05g48290
Os.8383.1.S1_at--1038--6611Chr05:27605039..27605063 (25 bp)
GTTGGGTTTCGGTCTTGAGTATACA
LOC_Os05g48290
Os.8383.1.S1_at--1060--6971Chr05:27605071..27605095 (25 bp)
GTACCATGTTATCTGTTTGGATCAT
NONE
Os.8383.1.S1_at--425--6871Chr05:27605085..27605109 (25 bp)
GTTTGGATCATCATTCTTTCTGTAA
NONE
Os.8383.1.S1_at--719--651Chr05:27605109..27605133 (25 bp)
ATGAACATTACTCCCTTTGGTTGCA
NONE
Target Sequence 
GATGTGTCTGATATTTGTGTTCTAATCTGAGGNTGTTTGTTTTTTTGAAGTGTTTTGTATCAGNTCGTCTTGTAGACACA
TATGGGACGGCCGGGTCTGTATTATCATGAAAGCTTTGTCCTAACAGCGGAACACTTTGAATGGGATTCTTATTTGCAGC
TTTACTCATGTGCGCTTGGCTCAAAATATGTTGGGTTTCGGTCTTGAGTATACATTCTATTGTACCATGTTATCTGTTTG
GATCATCATTCTTTCTGTAATGAACATTACTCCCTTTGGTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis