Browse Element(s) Details


OsAffx.15144.1.S1_at

Description tigr:9633.m04505
TID=OsAffx.15144.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g482806/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48240Os.8710.1.S1_at11/115+27564708..27570395Dynamin-related protein 1A, putative, expressed
LOC_Os05g48250NANA5+27574407..27575238hypothetical protein
LOC_Os05g48260OsAffx.27365.1.S1_at11/115+27577574..27581528condensation domain-containing protein, putative, expressed
LOC_Os05g48270Os.25562.1.S1_at11/115+27583058..27586077auxin-responsive protein, putative, expressed
LOC_Os05g48280OsAffx.15144.1.S1_at6/115+27590665..27596587expressed protein
LOC_Os05g48290OsAffx.15145.1.S1_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290OsAffx.15145.1.S1_x_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290Os.8383.1.S1_at8/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48300Os.56339.1.S1_at10/115+27606734..27608169expressed protein
LOC_Os05g48310OsAffx.27366.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48310Os.37945.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48320Os.11497.1.S1_at11/115+27616481..2761856960S ribosomal protein L37a, putative, expressed
LOC_Os05g48330OsAffx.23718.2.S1_x_at11/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48330OsAffx.23718.1.S1_x_at3/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15144.1.S1_at--284--2851Chr05:27595158..27595290 (25 bp)
AAGTCAACTTCGTCTGCCCAGGAAT
LOC_Os05g48280
OsAffx.15144.1.S1_at--157--8671Chr05:27595290..27595314 (25 bp)
TGTGGCTCTCGGATGTGACCAGATC
LOC_Os05g48280
OsAffx.15144.1.S1_at--96--1291Chr05:27595310..27595334 (25 bp)
AGATCCAAGTATATCGTCCGCGAGA
LOC_Os05g48280
OsAffx.15144.1.S1_at--353--8751Chr05:27595993..27596101 (25 bp)
TGTACTCGCCGTTCGCAACAAAAAT
LOC_Os05g48280
OsAffx.15144.1.S1_at--834--2151Chr05:27596132..27596156 (25 bp)
ACAGCGACTCCGAGTGATCGCGAAA
LOC_Os05g48280
OsAffx.15144.1.S1_at--942--1651Chr05:27596163..27596187 (25 bp)
AGCGCGACGCACAGAGATAGCAGCA
LOC_Os05g48280
OsAffx.15144.1.S1_at--1063--2771NONE
AAGAGAAACATCCACTGCTCCAAGC
NONE
OsAffx.15144.1.S1_at--772--2311Chr05:27598959..27598983 (25 bp)
AAAGGAGATGCTGCGCCTAAGGGAC
NONE
OsAffx.15144.1.S1_at--772--1791Chr05:27599008..27599032 (25 bp)
ACCGCACACCTCTGATGCATGAGAA
NONE
OsAffx.15144.1.S1_at--1144--1431Chr05:27599029..27599053 (25 bp)
AGAACGGATCTGACCCTGGAGGCTG
NONE
OsAffx.15144.1.S1_at--225--7091Chr05:27599116..27599140 (25 bp)
GTCAAGCAACCGACGACTGGCGGCT
NONE
Target Sequence 
AAGTCAACTTCGTCTGCCCAGGAATGTGGCTCTCGGATGTGACCAGATCCAAGTATATCGTCCGCGAGAAGAAGTCCACC
AAGAAGCTGTACTCGCCGTTCGCAACAAAAATACAGGGGACTGAAAGGGATGGAGAGCATGGACAGCGACTCCGAGTGAT
CGCGAAAACCCGGAGCGCGACGCACAGAGATAGCAGCACAAGTGGGGTGAATTTCGCGTTGGAGCCTGGAGAAAAATCGC
GGAAAAGAGAAACATCCACTGCTCCAAGCATGGACAGCAAAGGAGATGCTGCGCCTAAGGGACCTCGGGGCTTCGTCGCA
CACAGTAACCGCACACCTCTGATGCATGAGAACGGATCTGACCCTGGAGGCTGGAGCCCTTCCACGTTTCCATCACGCCA
AGCTGGACGGGGAGTAGGGAGGGACACCGAGAAAAGTCAAGCAACCGACGACTGGCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis