Browse Element(s) Details


Os.56339.1.S1_at

Description gb:AK109887.1
DB_XREF= gi:32995096
TID=Os.56339.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E01, full insert sequence.
FL= gb:AK109887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4830010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48270Os.25562.1.S1_at11/115+27583058..27586077auxin-responsive protein, putative, expressed
LOC_Os05g48280OsAffx.15144.1.S1_at6/115+27590665..27596587expressed protein
LOC_Os05g48290OsAffx.15145.1.S1_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290OsAffx.15145.1.S1_x_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290Os.8383.1.S1_at8/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48300Os.56339.1.S1_at10/115+27606734..27608169expressed protein
LOC_Os05g48310OsAffx.27366.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48310Os.37945.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48320Os.11497.1.S1_at11/115+27616481..2761856960S ribosomal protein L37a, putative, expressed
LOC_Os05g48330OsAffx.23718.2.S1_x_at11/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48330OsAffx.23718.1.S1_x_at3/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48340Os.5594.1.S1_at11/115+27629080..27634433proteasome, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006863biological_processpurine transport
GO:0010184biological_processcytokinin transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0005345molecular_functionpurine transporter activity
GO:0015211molecular_functionpurine nucleoside transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56339.1.S1_at--853--1071Chr05:27607026..27607050 (25 bp)
AGGGCAGCGTCCACAAGAGCCTGAC
LOC_Os05g48300
Os.56339.1.S1_at--1000--8131Chr05:27606982..27607006 (25 bp)
GGACACGTCGAGACGGCAGTTTGAA
LOC_Os05g48300
Os.56339.1.S1_at--959--5011Chr05:27606967..27606991 (25 bp)
GCAGTTTGAAGAGAACGAGCCATGT
LOC_Os05g48300
Os.56339.1.S1_at--871--5011Chr05:27606849..27606873 (25 bp)
GCAGGATGCGATGCCATTAGGTGTA
LOC_Os05g48300
Os.56339.1.S1_at--76--8771Chr05:27606828..27606852 (25 bp)
TGTAGTTGAGTCATGCATGTTGCAT
LOC_Os05g48300
Os.56339.1.S1_at--849--4991Chr05:27606814..27606838 (25 bp)
GCATGTTGCATGGATTAGGCTTACT
LOC_Os05g48300
Os.56339.1.S1_at--721--6491Chr05:27606802..27606826 (25 bp)
GATTAGGCTTACTTGCAAGGGACAA
LOC_Os05g48300
Os.56339.1.S1_at--1148--8791Chr05:27606773..27606797 (25 bp)
TGTTGCATGGATCAGTAGACCGACT
LOC_Os05g48300
Os.56339.1.S1_at--1035--1371Chr05:27606757..27606781 (25 bp)
AGACCGACTGTCTGTGCTTGTAACT
LOC_Os05g48300
Os.56339.1.S1_at--81--8731Chr05:27606749..27606773 (25 bp)
TGTCTGTGCTTGTAACTGATGGGTT
LOC_Os05g48300
Os.56339.1.S1_at--369--8851Chr05:27606734..27606757 (24 bp)
TGATGGGTTAGCTTGATTTGTTCAA
NONE
Target Sequence 
AGGGCAGCGTCCACAAGAGCCTGACAGGTGGCGGCGCGGCCGGAGGACACGTCGAGACGGCAGTTTGAAGAGAACGAGCC
ATGTGATGTGATGGGCTGGGCCGCGCGCGCGGAAACGAAGGGAGGGAGCGAGCGGTGCAACAAAAGGAAAAGAAACTGAA
GCAACAAAAAGAAATTGGCAGGATGCGATGCCATTAGGTGTAGTTGAGTCATGCATGTTGCATGGATTAGGCTTACTTGC
AAGGGACAAAAATTGTTGCATGGATCAGTAGACCGACTGTCTGTGCTTGTAACTGATGGGTTAGCTTGATTTGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis