Browse Element(s) Details


OsAffx.27366.1.S1_at

Description tigr:9633.m04508
TID=OsAffx.27366.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal protein L35Ae, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4831010/1160S ribosomal protein L33-B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48280OsAffx.15144.1.S1_at6/115+27590665..27596587expressed protein
LOC_Os05g48290OsAffx.15145.1.S1_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290OsAffx.15145.1.S1_x_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290Os.8383.1.S1_at8/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48300Os.56339.1.S1_at10/115+27606734..27608169expressed protein
LOC_Os05g48310OsAffx.27366.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48310Os.37945.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48320Os.11497.1.S1_at11/115+27616481..2761856960S ribosomal protein L37a, putative, expressed
LOC_Os05g48330OsAffx.23718.2.S1_x_at11/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48330OsAffx.23718.1.S1_x_at3/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48340Os.5594.1.S1_at11/115+27629080..27634433proteasome, putative, expressed
LOC_Os05g48350NANA5+27636556..27636801hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27366.1.S1_at--1108--1751Chr05:27612511..27612601 (25 bp)
ACCTCCATGTTTTGGCCATTTCTGA
LOC_Os05g48310
OsAffx.27366.1.S1_at--840--3511Chr05:27612585..27612606 (22 bp)
CATGTTTTGGCCATTTCTGATGTTT
LOC_Os05g48310
OsAffx.27366.1.S1_at--697--9471Chr05:27612597..27612621 (25 bp)
TCTGATGTTTTTGTTGGGTCGATAT
LOC_Os05g48310
OsAffx.27366.1.S1_at--287--2351NONE
AAAGCATCCAAGGAGTCCCAATCCA
NONE
OsAffx.27366.1.S1_at--701--2911Chr05:27613224..27613247 (24 bp)
AAGGAGTCCCAATCCAGGTCGGGAT
LOC_Os05g48310
OsAffx.27366.1.S1_at--111--571Chr05:27613234..27613258 (25 bp)
ATCCAGGTCGGGATCATGGCCCCAT
LOC_Os05g48310
OsAffx.27366.1.S1_at--10--8471Chr05:27613250..27613274 (25 bp)
TGGCCCCATCCTAACTTAACAGAAT
LOC_Os05g48310
OsAffx.27366.1.S1_at--1086--4991Chr05:27613282..27613306 (25 bp)
GCAGGAGGAATTTACTGGGATCCCT
LOC_Os05g48310
OsAffx.27366.1.S1_at--495--2971Chr05:27613290..27613314 (25 bp)
AATTTACTGGGATCCCTGGGATGGT
LOC_Os05g48310
OsAffx.27366.1.S1_at--337--6371Chr05:27613300..27613324 (25 bp)
GATCCCTGGGATGGTTTCAGGCTTC
LOC_Os05g48310
OsAffx.27366.1.S1_at--154--8591Chr05:27613311..27613335 (25 bp)
TGGTTTCAGGCTTCCAGTTGTTTGT
LOC_Os05g48310
Target Sequence 
ACCTCCATGTTTTGGCCATTTCTGATGTTTTTGTTGGGTCGATATGGTGGTGCAGGGCAAGAAGGTCCGCGTCTTCATGT
ACCCCAGCAGCATCTAAAAGCATCCAAGGAGTCCCAATCCAGGTCGGGATCATGGCCCCATCCTAACTTAACAGAATTGG
GGTGGCAGGAGGAATTTACTGGGATCCCTGGGATGGTTTCAGGCTTCCAGTTGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis