Browse Element(s) Details


Os.5594.1.S1_at

Description gb:AK102111.1
DB_XREF= gi:32987320
TID=Os.5594.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.5594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084F06, full insert sequence.
FL= gb:AK062090.1 gb:AK102111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4834011/11proteasome, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48290OsAffx.15145.1.S1_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290OsAffx.15145.1.S1_x_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290Os.8383.1.S1_at8/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48300Os.56339.1.S1_at10/115+27606734..27608169expressed protein
LOC_Os05g48310OsAffx.27366.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48310Os.37945.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48320Os.11497.1.S1_at11/115+27616481..2761856960S ribosomal protein L37a, putative, expressed
LOC_Os05g48330OsAffx.23718.2.S1_x_at11/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48330OsAffx.23718.1.S1_x_at3/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48340Os.5594.1.S1_at11/115+27629080..27634433proteasome, putative, expressed
LOC_Os05g48350NANA5+27636556..27636801hypothetical protein
LOC_Os05g48360Os.37910.1.S1_at11/115+27640132..27644189MAC/Perforin domain containing protein, expressed
LOC_Os05g48370Os.15774.1.S1_at11/115+27646303..27648140expressed protein
LOC_Os05g48380Os.50544.1.S1_at11/115+27650625..27655048ubiquitin-conjugating enzyme E2, putative, expressed
LOC_Os05g48390Os.15185.1.S1_s_at11/115+27656755..27664453Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5594.1.S1_at--1042--1131Chr05:27633078..27633099 (22 bp)
AGTCCAAAACTGACACCTTCGGCTC
LOC_Os05g48340
Os.5594.1.S1_at--813--3071Chr05:27633558..27633582 (25 bp)
AATCAACCTTGTTACAGATCCCAAA
LOC_Os05g48340
Os.5594.1.S1_at--929--2411Chr05:27633594..27633961 (25 bp)
AAAACTTGGCATGGAAGCACGGCAT
LOC_Os05g48340
Os.5594.1.S1_at--810--8371Chr05:27633973..27633997 (25 bp)
GGCGATCAGCAAGGCATTATCATCA
LOC_Os05g48340
Os.5594.1.S1_at--161--10811Chr05:27634199..27634223 (25 bp)
TTGTCCCGGCAGAGAGGTTTTAACT
LOC_Os05g48340
Os.5594.1.S1_at--21--6811Chr05:27634215..27634239 (25 bp)
GTTTTAACTCTTTACCTGAAGCACA
LOC_Os05g48340
Os.5594.1.S1_at--25--2431Chr05:27634266..27634290 (25 bp)
AAAACTGAGGATGCCTATGCAGCTG
LOC_Os05g48340
Os.5594.1.S1_at--318--651Chr05:27634282..27634306 (25 bp)
ATGCAGCTGGCTTTTTGTATATGGT
LOC_Os05g48340
Os.5594.1.S1_at--285--711Chr05:27634322..27634346 (25 bp)
ATGATGGATGTACCACCTGTGTTCC
LOC_Os05g48340
Os.5594.1.S1_at--67--10671Chr05:27634343..27634367 (25 bp)
TTCCTGGTGCGCTAAACATGTCTTT
LOC_Os05g48340
Os.5594.1.S1_at--305--10251Chr05:27634365..27634389 (25 bp)
TTTGACGACCGAAGATACTGTTATT
LOC_Os05g48340
Target Sequence 
AGTCCAAAACTGACACCTTCGGCTCTTCTTCTGTCGGTGTTACAACAAGATCCAGACATAAGGATAACTGGTTACAGAGT
AATATCTGGCCTTGTTGCCAGAGAATGGTGCCTAATGGAAATTTGTTCAAAGTTGGACATAATCAACCTTGTTACAGATC
CCAAAATGGAGATGACAAAACTTGGCATGGAAGCACGGCATGATTGTTGTNTGGCGATCAGCAAGGCATTATCATCATCA
CATCTTCTTCATGAACCAAGCCTTTNTGAACTCATTGGAAAGTTGAATGAAGCGGTTAAAAGGGGTCCTTATCTTTNTGA
GAGGAAGCGTGTGGAGCCACAGCCGGTGGTTGTCCCGGCAGAGAGGTTTTAACTCTTTACCTGAAGCACAGGCCGTNTAA
CCTTTGCAACCCAGAGAAAACTGAGGATGCCTATGCAGCTGGCTTTTTGTATATGGTTAACCAAAAATAGAGATGATGGA
TGTACCACCTGTGTTCCTGGTGCGCTAAACATGTCTTTGACGACCGAAGATACTGTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis