Browse Element(s) Details


Os.9873.1.S1_at

Description gb:AK103170.1
DB_XREF= gi:32988379
TID=Os.9873.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121F20, full insert sequence.
FL= gb:AK103170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4841611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48380Os.50544.1.S1_at11/115+27650625..27655048ubiquitin-conjugating enzyme E2, putative, expressed
LOC_Os05g48390Os.15185.1.S1_s_at11/115+27656755..27664453Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os05g48400OsAffx.4651.1.S1_at11/115+27666072..27666717hypothetical protein
LOC_Os05g48410Os.8883.1.S1_at11/115+27672841..2767585750S ribosomal protein L21, mitochondrial precursor, putative, expressed
LOC_Os05g48416Os.9873.1.S1_at11/115+27676281..27680377expressed protein
LOC_Os05g48422Os.49122.1.S1_at11/115+27681587..27683386ribosomal protein, putative, expressed
LOC_Os05g48430NANA5+27689003..27689218hypothetical protein
LOC_Os05g48440OsAffx.28933.1.S1_x_at11/115+27692256..27693130hypothetical protein
LOC_Os05g48444OsAffx.26611.1.S1_x_at11/115+27694425..27695797hypothetical protein
LOC_Os05g48444OsAffx.26611.2.S1_at1/115+27694425..27695797hypothetical protein
LOC_Os05g48450Os.3282.2.S1_x_at10/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450Os.3282.3.S1_x_at7/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450OsAffx.16132.1.S1_at1/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48470Os.50949.2.S1_at6/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.50949.2.S1_x_at2/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.52566.1.S1_at1/115+27702618..27705079hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9873.1.S1_at--1048--8031Chr05:27676719..27676743 (25 bp)
GGAGTACGCCGAATCGTTGCTCGCC
LOC_Os05g48416
Os.9873.1.S1_at--547--3911Chr05:27676541..27676565 (25 bp)
CTGGACCATGCGTGGATGGTGCACT
LOC_Os05g48416
Os.9873.1.S1_at--844--6251Chr05:27676527..27676551 (25 bp)
GATGGTGCACTCCACGCTGAGAAAG
LOC_Os05g48416
Os.9873.1.S1_at--154--4371Chr05:27676516..27676540 (25 bp)
CCACGCTGAGAAAGGATCATGCCGA
LOC_Os05g48416
Os.9873.1.S1_at--654--6211Chr05:27676493..27676517 (25 bp)
GAGGCTGATGCCACTCAGATGTGTG
LOC_Os05g48416
Os.9873.1.S1_at--498--3431Chr05:27676478..27676502 (25 bp)
CAGATGTGTGAAGCCCTGATGGCCA
LOC_Os05g48416
Os.9873.1.S1_at--971--4271Chr05:27676464..27676488 (25 bp)
CCTGATGGCCATGCTCGTTGAGATT
LOC_Os05g48416
Os.9873.1.S1_at--43--2291Chr05:27676430..27676454 (25 bp)
AAATGCTGCTGATCATAATCTTACA
LOC_Os05g48416
Os.9873.1.S1_at--260--3571Chr05:27676417..27676441 (25 bp)
CATAATCTTACAGTTTCTTGGTTAA
LOC_Os05g48416
Os.9873.1.S1_at--635--4371Chr05:27676367..27676391 (25 bp)
CCAAACTTAGGATCCAATGCCATAA
LOC_Os05g48416
Os.9873.1.S1_at--256--5271Chr05:27676307..27676331 (25 bp)
GAATGATTTCCACTTTGAAGGACCA
LOC_Os05g48416
Target Sequence 
GGAGTACGCCGAATCGTTGCTCGCCTCTCTGAAGCTCCCCGTGGTCGTGCCGGCCNTCGGCGGCCATGGCCGTCAGCGCG
CTCCACCTGANGNTGCGCTACGGCGAGAGGAGCGACGGCCTGGTGACGCGGCGGGACGCCGAGGTGCCCGGGNTCGGTGG
TGGTGAGGCCGGAGAGGAGGCTGGACCATGCGTGGATGGTGCACTCCACGCTGAGAAAGGATCATGCCGAGGCTGATGCC
ACTCAGATGTGTGAAGCCCTGATGGCCATGCTCGTTGAGATTGGGAGGAAGAAATGCTGCTGATCATAATCTTACAGTTT
CTTGGTTAAATTCAAGTTTGAACTTGAGTTTAAACCAAACTTAGGATCCAATGCCATAATCATAGATGATGTTACAAGGC
AGTTTACAAATACAGAATGATTTCCACTTTGAAGGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis