Browse Element(s) Details


Os.3282.2.S1_x_at

Description gb:AK072756.1
DB_XREF= gi:32982779
TID=Os.3282.2
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3282 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative aminotransferase (OSJNBa0082M15.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138J17, full insert sequence.
FL= gb:AK072756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4845010/11Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os10g402007/11Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os02g345701/113' exoribonuclease family, domain 2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48410Os.8883.1.S1_at11/115+27672841..2767585750S ribosomal protein L21, mitochondrial precursor, putative, expressed
LOC_Os05g48416Os.9873.1.S1_at11/115+27676281..27680377expressed protein
LOC_Os05g48422Os.49122.1.S1_at11/115+27681587..27683386ribosomal protein, putative, expressed
LOC_Os05g48430NANA5+27689003..27689218hypothetical protein
LOC_Os05g48440OsAffx.28933.1.S1_x_at11/115+27692256..27693130hypothetical protein
LOC_Os05g48444OsAffx.26611.1.S1_x_at11/115+27694425..27695797hypothetical protein
LOC_Os05g48444OsAffx.26611.2.S1_at1/115+27694425..27695797hypothetical protein
LOC_Os05g48450Os.3282.2.S1_x_at10/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450Os.3282.3.S1_x_at7/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48450OsAffx.16132.1.S1_at1/115+27695532..27701562Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g48470Os.50949.2.S1_at6/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.50949.2.S1_x_at2/115+27702618..27705079hypothetical protein
LOC_Os05g48470Os.52566.1.S1_at1/115+27702618..27705079hypothetical protein
LOC_Os05g48480OsAffx.28933.1.S1_x_at9/115+27706932..27707806hypothetical protein
LOC_Os05g48489OsAffx.26611.1.S1_x_at11/115+27709101..27710473hypothetical protein
LOC_Os05g48489OsAffx.26611.2.S1_at1/115+27709101..27710473hypothetical protein
LOC_Os05g48500Os.9102.2.S1_x_at11/115+27710172..27715109expressed protein
LOC_Os05g48500OsAffx.27368.1.A1_at11/115+27710172..27715109expressed protein
LOC_Os05g48500Os.9102.1.S1_x_at11/115+27710172..27715109expressed protein
LOC_Os05g48500OsAffx.16132.1.S1_at1/115+27710172..27715109expressed protein
LOC_Os05g48510Os.5132.1.S1_at11/115+27717677..27724156phenylalanyl-tRNA synthetase beta chain, putative, expressed
LOC_Os05g48520Os.53194.1.S1_at11/115+27723814..27726424Glyoxal oxidase N-terminus family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0005739cellular_componentmitochondrion
GO:0000175molecular_function3'-5'-exoribonuclease activity
GO:0003723molecular_functionRNA binding
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3282.2.S1_x_at--32--6912Chr10:21193962..21193986 (25 bp)
GTATCATTGATGTTGCTCTGAGCAA
LOC_Os10g40200
Os.3282.2.S1_x_at--982--3472Chr10:21194467..21194491 (25 bp)
CAGGAACTGCTGTCGTAGTGTCTCC
LOC_Os10g40200
Os.3282.2.S1_x_at--9--1112Chr10:21194483..21194507 (25 bp)
AGTGTCTCCTGTGGGTAGTATTACC
LOC_Os10g40200
Os.3282.2.S1_x_at--485--2312Chr10:21195077..21195099 (23 bp)
AAAGGGTCGAATATGCTGGCAACAA
LOC_Os10g40200
Os.3282.2.S1_x_at--369--7752Chr10:21195107..21195131 (25 bp)
GGTGTCGTGTCTCAGCAGCTATATA
LOC_Os10g40200
Os.3282.2.S1_x_at--159--8851Chr10:21195251..21195275 (25 bp)
TGATCATGTGTACCCTTCAGTTTTG
LOC_Os10g40200
Os.3282.2.S1_x_at--649--1212Chr10:21195280..21195302 (23 bp)
AGTTTTGTTGGTGTGACATCCTGCT
LOC_Os10g40200
Os.3282.2.S1_x_at--1087--1392Chr10:21195313..21195339 (25 bp)
AGACGGCAGTGCATTAGCGCGAAGC
NONE
Os.3282.2.S1_x_at--557--2932Chr10:21195349..21195373 (25 bp)
AAGGAACGACACCATGCATCCAGCT
NONE
Os.3282.2.S1_x_at--609--3531Chr05:27701407..27701431 (25 bp)
CATCCAGCTTTTATGCCTTTTGCAT
LOC_Os05g48450
Os.3282.2.S1_x_at--1054--2572Chr05:27701441..27701465 (25 bp)
AACGTGGAAGGCTTTCCTGACTGAA
LOC_Os05g48450
Target Sequence 
GTATCATTGATGTTGCTCTGAGCAAGGGTTTCCAGGTCGAGGAGCGACTTGTGTCAGTAGATGAGCTGCTTGAAGCTGAT
GAGGTTTTCTGCACAGGAACTGCTGTCGTAGTGTCTCCTGTGGGTAGTATTACCTATCAAGGGAAAAGGGTCGAATATGC
TGGCAACAAAGGAGTTGGTGTCGTGTCTCAGCAGCTATATACTTCATTNACAAGCCTGCAGATGGGCCAGGCAGAAGATT
GGCTAGGCTGGACTGTGCAACTGAGTTAGGAAGTAATAAAATGTTCATCAACATCAAAAGATGGACATGATTATGATCAT
GTGTACCCTTCAGTTTTGTAGTTTTGTTGGTGTGACATCCTGCTGTATATGTATAGACGGCAGTGCATTAGCGCGAAGCA
GTTTTTGCTAAGGAACGACACCATGCATCCAGCTTTTATGCCTTTTGCATGAGAAATCAAACGTGGAAGGCTTTCCTGAC
TGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3282.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis