Browse Element(s) Details


Os.3282.3.S1_x_at

Description gb:NM_197648.1
DB_XREF= gi:37536655
TID=Os.3282.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.3282 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative aminotransferase (OSJNBa0082M15.2), mRNA.
PROD=putative aminotransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g402008/11Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os05g484507/11Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40150NANA10+21164197..21170307retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40160NANA10+21170623..21173548retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40170Os.46502.2.S1_x_at10/1110+21175673..21175963expressed protein
LOC_Os10g40170Os.46502.1.S1_at2/1110+21175673..21175963expressed protein
LOC_Os10g40180OsAffx.10596.1.S1_x_at1/1110+21177216..21183014retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40190NANA10+21184200..21187113retrotransposon protein, putative, unclassified
LOC_Os10g40200Os.3282.3.S1_x_at8/1110+21190615..21195312Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os10g40200Os.3282.2.S1_x_at7/1110+21190615..21195312Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os10g40210OsAffx.30732.1.S1_at11/1110+21196332..21198779hypothetical protein
LOC_Os10g40220OsAffx.18587.2.S1_at11/1110+21200811..21211309expressed protein
LOC_Os10g40220Os.53101.1.S1_at1/1110+21200811..21211309expressed protein
LOC_Os10g40230OsAffx.7922.1.S1_at11/1110+21215712..21217582hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3282.3.S1_x_at--33--6912Chr10:21193962..21193986 (25 bp)
GTATCATTGATGTTGCTCTGAGCAA
LOC_Os10g40200
Os.3282.3.S1_x_at--983--3472Chr10:21194467..21194491 (25 bp)
CAGGAACTGCTGTCGTAGTGTCTCC
LOC_Os10g40200
Os.3282.3.S1_x_at--8--1112Chr10:21194483..21194507 (25 bp)
AGTGTCTCCTGTGGGTAGTATTACC
LOC_Os10g40200
Os.3282.3.S1_x_at--484--2312Chr10:21195077..21195099 (23 bp)
AAAGGGTCGAATATGCTGGCAACAA
LOC_Os10g40200
Os.3282.3.S1_x_at--368--7752Chr10:21195107..21195131 (25 bp)
GGTGTCGTGTCTCAGCAGCTATATA
LOC_Os10g40200
Os.3282.3.S1_x_at--129--251Chr10:21195127..21195151 (25 bp)
ATATACTTCATTGACAAGCCTGCAG
LOC_Os10g40200
Os.3282.3.S1_x_at--158--8851Chr10:21195251..21195275 (25 bp)
TGATCATGTGTACCCTTCAGTTTTG
LOC_Os10g40200
Os.3282.3.S1_x_at--118--1212Chr10:21195277..21195301 (25 bp)
AGTTTTTGTTGGTGTGACATCCTGC
LOC_Os10g40200
Os.3282.3.S1_x_at--1086--1391Chr10:21195313..21195337 (25 bp)
AGACGGCAGTGCATTATAGCGCGAA
NONE
Os.3282.3.S1_x_at--691--5452Chr10:21195352..21195376 (25 bp)
GAACGACACCATGCATCCAGCTTTA
NONE
Os.3282.3.S1_x_at--886--2931Chr10:21195405..21195429 (25 bp)
AAGGCTCTCCTGACTGAAATATCGA
NONE
Target Sequence 
GTATCATTGATGTTGCTCTGAGCAAGGGTTTCCAGGTCGAGGAGCGACTTGTGTCAGTAGACGAGCTGCTTGAAGCTGAT
GAGGTTTTCTGCACAGGAACTGCTGTCGTAGTGTCTCCTGTGGGTAGTATTACCTATCAAGGGAAAAGGGTCGAATATGC
TGGCAACAAAGGAGTTGGTGTCGTGTCTCAGCAGCTATATACTTCATTGACAAGCCTGCAGATGGGCCAGGCAGAAGATT
GGCTAGGCTGGACTGTGCAACTGAGTTAGGAAGTAATAAAATGTTCATCAACATCAAAACTCAAAAGATGGACATGATTA
TGATCATGTGTACCCTTCAGTTTTGTAGTTTTTGTTGGTGTGACATCCTGCTGTATATGTATAGACGGCAGTGCATTATA
GCGCGAAGCAGTTTTGCTAAGGAACGACACCATGCATCCAGCTTTATGCCTTTTGCATGAGAAATCAAACGTGGAAGGCT
CTCCTGACTGAAATATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3282.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis