Browse Element(s) Details


OsAffx.10596.1.S1_x_at

Description gb:NM_184173.1
DB_XREF= gi:34895437
GEN=P0037C04.13
TID=OsAffx.10596.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0037C04.13 (P0037C04.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g334901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g148001/11retrotransposon protein, putative, unclassified
LOC_Os09g141801/11transposon protein, putative, unclassified
LOC_Os05g253001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g401801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g483301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g112901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g398101/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33430Os.50625.1.S1_at10/115+19562514..19564236Basic 7S globulin precursor, putative, expressed
LOC_Os05g33440Os.51907.1.S1_at11/115+19566582..19567950mTERF family protein, expressed
LOC_Os05g33450NANA5+19570712..19571221xanthine/uracil/vitamin C permease family protein, putative
LOC_Os05g33460Os.23176.1.S1_at11/115+19575229..19576768mTERF family protein, expressed
LOC_Os05g33470NANA5+19578271..19581203hypothetical protein
LOC_Os05g33480NANA5+19584292..19587277retrotransposon protein, putative, unclassified
LOC_Os05g33490OsAffx.10596.1.S1_x_at1/115+19588029..19594222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33500Os.4917.1.S1_at11/115+19595043..19596957mitochondrial transcription termination factor family protein, putative, expressed
LOC_Os05g33510Os.5331.1.S1_at10/115+19598629..19601454expressed protein
LOC_Os05g33514Os.55269.1.S1_at9/115+19601640..19603680expressed protein
LOC_Os05g33520Os.49624.1.S1_at11/115+19608206..19611145expressed protein
LOC_Os05g33530OsAffx.14940.1.S1_x_at5/115+19614656..19615075hypothetical protein
LOC_Os05g33539NANA5+19616516..19616952NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10596.1.S1_x_at--105--76956Chr12:3475529..3475747 (25 bp)
GGGTATCACCCGTCGACAGTTCGGT
NONE
OsAffx.10596.1.S1_x_at--878--7231Chr01:1347411..1347435 (25 bp)
GTCCGACCGAAAAATTCGATCTCGT
NONE
OsAffx.10596.1.S1_x_at--112--9391Chr01:1347426..1347449 (24 bp)
TCGATCTCGTTCTTCGATTTTTCGA
NONE
OsAffx.10596.1.S1_x_at--887--10571Chr01:1347438..1347591 (25 bp)
TTCGATTTTTCGAGGCATCGCCGGC
NONE
OsAffx.10596.1.S1_x_at--291--3471NONE
CAGTGGTGTGCGTCGGAATCTGATC
NONE
OsAffx.10596.1.S1_x_at--870--5251Chr01:1348842..1348866 (25 bp)
GAATCTGATCTCTGTACCAACTCTT
NONE
OsAffx.10596.1.S1_x_at--942--531Chr01:1348880..1348904 (25 bp)
ATCGCGTCTGCACATGCGCACGTGG
NONE
OsAffx.10596.1.S1_x_at--1101--8751Chr01:1348909..1348933 (25 bp)
TGTATGGTCTGGTCGACGAGCACAA
NONE
OsAffx.10596.1.S1_x_at--283--5951Chr01:1348926..1348950 (25 bp)
GAGCACAAGCACGTGCTACACGCAT
NONE
OsAffx.10596.1.S1_x_at--257--1911Chr01:1348936..1348960 (25 bp)
ACGTGCTACACGCATGCTCAGCGGC
NONE
OsAffx.10596.1.S1_x_at--618--3751Chr01:1348952..1348976 (25 bp)
CTCAGCGGCCCAGCGAGTTGAGAGA
NONE
Target Sequence 
GGGTATCACCCGTCGACAGTTCGGTCCGACCGAAAAATTCGATCTCGTTCTTCGATTTTTCGAGGCATCGCCGGCGCGGT
GGAGGGCGGAGGCGTCGGCTGCGGCATGGTGGAGGACGGCGTTGTCGGCCACGGCGCGGTGGAGGACGGCGGCGTCGAAC
GCGGCGCGGTGGAGGATAGCGGCGGCCGCCACGCGGTGGAGGCGGAGGCGGCGGCCGCGGCTCGGTGGAGGGCGGAGGCG
GCGGCCGCGGCGCGGTGGAGGGCGGAGGCAGGCCACGGCGCGATGGAGGGCGGAGGCGGCTGCAGCGACGCGGTGCAGGC
TGGAGGAGGAGGCGGCTGCAGCGACGCGGTGCAGGCTGGAGGAGGAGGCGGCGCTGTGCGGCAGTGGTGTGCGTCGGAAT
CTGATCTCTGTACCAACTCTTCTCTCCGCATCGCATCGCGTCTGCACATGCGCACGTGGTGCATGTATGGTCTGGTCGAC
GAGCACAAGCACGTGCTACACGCATGCTCAGCGGCCCAGCGAGTTGAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10596.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis