Browse Element(s) Details


Os.23176.1.S1_at

Description gb:AK073042.1
DB_XREF= gi:32983065
TID=Os.23176.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150H08, full insert sequence.
FL= gb:AK073042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3346011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33400Os.26626.1.S1_at7/115+19548822..19550296Basic 7S globulin precursor, putative, expressed
LOC_Os05g33410Os.26626.1.S1_at1/115+19551358..19552671Basic 7S globulin precursor, putative, expressed
LOC_Os05g33420NANA5+19555731..19557051Xyloglucanase inhibitor, putative
LOC_Os05g33430Os.50625.1.S1_at10/115+19562514..19564236Basic 7S globulin precursor, putative, expressed
LOC_Os05g33440Os.51907.1.S1_at11/115+19566582..19567950mTERF family protein, expressed
LOC_Os05g33450NANA5+19570712..19571221xanthine/uracil/vitamin C permease family protein, putative
LOC_Os05g33460Os.23176.1.S1_at11/115+19575229..19576768mTERF family protein, expressed
LOC_Os05g33470NANA5+19578271..19581203hypothetical protein
LOC_Os05g33480NANA5+19584292..19587277retrotransposon protein, putative, unclassified
LOC_Os05g33490OsAffx.10596.1.S1_x_at1/115+19588029..19594222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33500Os.4917.1.S1_at11/115+19595043..19596957mitochondrial transcription termination factor family protein, putative, expressed
LOC_Os05g33510Os.5331.1.S1_at10/115+19598629..19601454expressed protein
LOC_Os05g33514Os.55269.1.S1_at9/115+19601640..19603680expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23176.1.S1_at--866--3731Chr05:19575779..19575803 (25 bp)
CTAAAGCTTGAAATGCGCGAGGTAA
LOC_Os05g33460
Os.23176.1.S1_at--324--4231Chr05:19575659..19575683 (25 bp)
CCAGATATCCAGTTGCTTCATGCAT
LOC_Os05g33460
Os.23176.1.S1_at--742--9071Chr05:19575646..19575670 (25 bp)
TGCTTCATGCATTGCTTGGCAGTGC
LOC_Os05g33460
Os.23176.1.S1_at--513--6851Chr05:19575591..19575615 (25 bp)
GTTTGCTGCTGATGTGCCAGACGTT
LOC_Os05g33460
Os.23176.1.S1_at--188--9631Chr05:19575522..19575546 (25 bp)
TCAGGGTCAGGGTGTTTAAGTCCAC
LOC_Os05g33460
Os.23176.1.S1_at--995--111Chr05:19575401..19575425 (25 bp)
ATTCTAACGCTGTTTCATGGAGCAG
LOC_Os05g33460
Os.23176.1.S1_at--897--1531Chr05:19575378..19575402 (25 bp)
AGCATTACTCTGTTGTTGGACCATG
LOC_Os05g33460
Os.23176.1.S1_at--268--6951Chr05:19575332..19575356 (25 bp)
GTAGTTTAGCAGTTTCCATTTTGAA
LOC_Os05g33460
Os.23176.1.S1_at--868--7431Chr05:19575294..19575318 (25 bp)
GGGAAACCTAGATACATGACGTCGT
LOC_Os05g33460
Os.23176.1.S1_at--502--3991Chr05:19575275..19575299 (25 bp)
CGTCGTAGTGATACCTTTAAGGCCA
LOC_Os05g33460
Os.23176.1.S1_at--322--2931Chr05:19575257..19575281 (25 bp)
AAGGCCAATTCCTCTATCATTTTCT
LOC_Os05g33460
Target Sequence 
CTAAAGCTTGAAATGCGCGAGGTAATGGTGCATCCNGTTGTTATGGCATATAGCTTTGAGAAGACCATCCTGCCANGGTG
TGCCGTGTTGAGCGTGTTGATGAGAGAGGGGAAGATTAATCCAGATATCCAGTTGCTTCATGCATTGCTTGGCAGTGCCA
AGACATTNTCAGGGAGGTATGTAGATAGGTTTGCTGCTGATGTGCCAGACGTTGTTGAAGCATATGAGGGTAAGATCAAA
TTCAAAGGATTCAAGGGTCAGGGTCAGGGTGTTTAAGTCCACGGAAGCCAAAAGGCTATTNTTNTGGAGCAAAATCACTT
CAGGTTGGGTTGTCTGTTTTTNTTTTAGAGCCATTGAGATCAAGGCATATGATTCTAAATTCTAACGCTGTTTCATGGAG
CAGCATTACTCTGTTGTTGGACCATGGTTACTTAGTATCANANATTTGTAGTTTAGCAGTTTCCATTTTGAAGTATTCTG
GTCTTGGGAAACCTAGATACATGACGTCGTAGTGATACCTTTAAGGCCAATTCCTCTATCATTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis