Browse Element(s) Details


Os.55269.1.S1_at

Description gb:AK107768.1
DB_XREF= gi:32992977
TID=Os.55269.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-B04, full insert sequence.
FL= gb:AK107768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g335149/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33460Os.23176.1.S1_at11/115+19575229..19576768mTERF family protein, expressed
LOC_Os05g33470NANA5+19578271..19581203hypothetical protein
LOC_Os05g33480NANA5+19584292..19587277retrotransposon protein, putative, unclassified
LOC_Os05g33490OsAffx.10596.1.S1_x_at1/115+19588029..19594222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33500Os.4917.1.S1_at11/115+19595043..19596957mitochondrial transcription termination factor family protein, putative, expressed
LOC_Os05g33510Os.5331.1.S1_at10/115+19598629..19601454expressed protein
LOC_Os05g33514Os.55269.1.S1_at9/115+19601640..19603680expressed protein
LOC_Os05g33520Os.49624.1.S1_at11/115+19608206..19611145expressed protein
LOC_Os05g33530OsAffx.14940.1.S1_x_at5/115+19614656..19615075hypothetical protein
LOC_Os05g33539NANA5+19616516..19616952NA
LOC_Os05g33550Os.12055.1.S1_at11/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33550OsAffx.27139.1.S1_at8/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55269.1.S1_at--237--9231NONE
TCCAGGATTGCCTCGTGGAGTCCAA
NONE
Os.55269.1.S1_at--287--9431Chr05:19603278..19603302 (25 bp)
TCGTGGAGTCCAACCGCAGCTGGAA
LOC_Os05g33514
Os.55269.1.S1_at--915--3811NONE
CTGCCAAGCACATGTTCAAGCCTTG
NONE
Os.55269.1.S1_at--973--10551Chr05:19601892..19601916 (25 bp)
TTCTTCATTGAGGATGGCGACACCA
LOC_Os05g33514
Os.55269.1.S1_at--63--8391Chr05:19601877..19601901 (25 bp)
GGCGACACCATAGGCAGCGTGTTTA
LOC_Os05g33514
Os.55269.1.S1_at--255--7811Chr05:19601828..19601852 (25 bp)
GGTCTACAGCATCATAACCTGGAGT
LOC_Os05g33514
Os.55269.1.S1_at--191--5431Chr05:19601790..19601814 (25 bp)
GAACCTGTAGTTAGATTTCGACCGA
LOC_Os05g33514
Os.55269.1.S1_at--691--2311Chr05:19601766..19601790 (25 bp)
AAAGGACACAGGATGAGCTCGCCAC
LOC_Os05g33514
Os.55269.1.S1_at--243--5911Chr05:19601752..19601776 (25 bp)
GAGCTCGCCACGTTAACTGAACTTG
LOC_Os05g33514
Os.55269.1.S1_at--913--2511Chr05:19601733..19601757 (25 bp)
AACTTGCTTGATTGTTTCTGGTGGC
LOC_Os05g33514
Os.55269.1.S1_at--955--8491Chr05:19601712..19601736 (25 bp)
TGGCAGTCGCTGTTTCTTCACATTT
LOC_Os05g33514
Target Sequence 
TCCAGGATTGCCTCGTGGAGTCCAACCGCAGCTGGAAGGCCTGCCAAGCACATGTTCAAGCCTTGAAAGCATGTGAGGCA
AAGAGAAACAAAAGTGAAACAAGATAAAATTATTTTGCAATATTTGGCACTAATACCAGTCTGCTTTTGGAAGGTTTATC
ATATTCTTCATTGAGGATGGCGACACCATAGGCAGCGTGTTTAGAGCTGTTAGCTGATGATGGAGAAGGTCTACAGCATC
ATAACCTGGAGTTAACTTGTTAAAAGAACCTGTAGTTAGATTTCGACCGAAAGGACACAGGATGAGCTCGCCACGTTAAC
TGAACTTGCTTGATTGTTTCTGGTGGCAGTCGCTGTTTCTTCACATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis