Browse Element(s) Details


OsAffx.14940.1.S1_x_at

Description tigr:9633.m03089
TID=OsAffx.14940.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g335305/11hypothetical protein
LOC_Os12g135201/11hypothetical protein
LOC_Os06g288701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33490OsAffx.10596.1.S1_x_at1/115+19588029..19594222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33500Os.4917.1.S1_at11/115+19595043..19596957mitochondrial transcription termination factor family protein, putative, expressed
LOC_Os05g33510Os.5331.1.S1_at10/115+19598629..19601454expressed protein
LOC_Os05g33514Os.55269.1.S1_at9/115+19601640..19603680expressed protein
LOC_Os05g33520Os.49624.1.S1_at11/115+19608206..19611145expressed protein
LOC_Os05g33530OsAffx.14940.1.S1_x_at5/115+19614656..19615075hypothetical protein
LOC_Os05g33539NANA5+19616516..19616952NA
LOC_Os05g33550Os.12055.1.S1_at11/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33550OsAffx.27139.1.S1_at8/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33560NANA5+19631580..19632224hypothetical protein
LOC_Os05g33570Os.7144.2.S1_a_at11/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33570OsAffx.27140.1.S1_at9/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14940.1.S1_x_at--785--852Chr12:7585461..7585485 (25 bp)
ATGGCAGTCCGCGAGCGAGGAGTGG
LOC_Os12g13520
OsAffx.14940.1.S1_x_at--559--1091NONE
AGTGGCCAAAGGCCGACCGCTCAGA
NONE
OsAffx.14940.1.S1_x_at--178--4511NONE
GCCGACCGCTCAGAAGAGGGAAATC
NONE
OsAffx.14940.1.S1_x_at--489--3751NONE
CTCAGAAGAGGGAAATCGTGGCCGA
NONE
OsAffx.14940.1.S1_x_at--819--4671NONE
GCGGAATCAGGAGGCCAACCGGCCA
NONE
OsAffx.14940.1.S1_x_at--435--7591Chr05:19614883..19614907 (25 bp)
GGGAGGTCAAACTGGCGTGATTTTT
LOC_Os05g33530
OsAffx.14940.1.S1_x_at--134--5291Chr05:19614934..19614958 (25 bp)
GAATGGGTGGCGACCATGTCCGCAC
LOC_Os05g33530
OsAffx.14940.1.S1_x_at--572--5831Chr05:19614945..19614969 (25 bp)
GACCATGTCCGCACGGTTGGACGTG
LOC_Os05g33530
OsAffx.14940.1.S1_x_at--530--1931Chr04:15520931..15520950 (20 bp)
ACGGTTGGACGTGCGCGCGGAAGGC
NONE
OsAffx.14940.1.S1_x_at--536--6011Chr05:19614982..19615006 (25 bp)
GAGAGGCGGCGGTTTTAGCGGCGGG
LOC_Os05g33530
OsAffx.14940.1.S1_x_at--247--5192Chr06:16461292..16461311 (20 bp)
GCAATGGCGGCAGTTGCCGGTCCAT
LOC_Os06g28870
Target Sequence 
ATGGCAGTCCGCGAGCGAGGAGTGGCGGATGACNACNGGAAGAGCCTGAGGAGGACGAAGGGGNGATTAGAAGAGGGAGA
GGACGGGCNTGGCGAAGGGCAANAGTGGCCAAAGGCCGACCGCTCAGAAGAGGGAAATCGTGGCCGAGAGGGGCGGAATC
AGGAGGCCAACCGGCCAGCGACGTGGGGTGGCGACGTGGAGCTCGAGGGAGGTCAAACTGGCGTGATTTTTGGGGAAAAG
TGGAGGAAAATGAGGAGGAATGGGTGGCGACCATGTCCGCACGGTTGGACGTGCGCGCGGAAGGCGAGAGGCGGCGGTTT
TAGCGGCGGGGTGGGGTGGCAATGGCGGCAGTTGCCGGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14940.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis