Browse Element(s) Details


Os.7144.2.S1_a_at

Description gb:AK103898.1
DB_XREF= gi:32989107
TID=Os.7144.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for orthophosphate dikinase, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150I16, full insert sequence.
FL= gb:AK103898.1 gb:AK101783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3357011/11Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33520Os.49624.1.S1_at11/115+19608206..19611145expressed protein
LOC_Os05g33530OsAffx.14940.1.S1_x_at5/115+19614656..19615075hypothetical protein
LOC_Os05g33539NANA5+19616516..19616952NA
LOC_Os05g33550Os.12055.1.S1_at11/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33550OsAffx.27139.1.S1_at8/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33560NANA5+19631580..19632224hypothetical protein
LOC_Os05g33570Os.7144.2.S1_a_at11/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33570OsAffx.27140.1.S1_at9/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33580Os.55404.1.S1_at6/115+19656771..19657448expressed protein
LOC_Os05g33590OsAffx.27141.1.S1_at11/115+19659153..19661654Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.57218.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.15851.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016310biological_processphosphorylation
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7144.2.S1_a_at--525--4751Chr05:19636298..19636322 (25 bp)
GCTGAGTTCTTCTCCTTTGGAACAA
LOC_Os05g33570
Os.7144.2.S1_a_at--453--8731Chr05:19636207..19636231 (25 bp)
TGTCTCAGGGTATCCTCCAGCATGA
LOC_Os05g33570
Os.7144.2.S1_a_at--51--5831Chr05:19636010..19636208 (25 bp)
GACCCCTTTGAGGTGCTTGATCAGA
LOC_Os05g33570
Os.7144.2.S1_a_at--1076--10311Chr05:19635789..19635813 (25 bp)
TTTCTTTGCGAAGGCTGGGCTGGAC
LOC_Os05g33570
Os.7144.2.S1_a_at--1008--5691Chr05:19635767..19635791 (25 bp)
GACTATGTTTCTTGTTCGCCTTTCA
LOC_Os05g33570
Os.7144.2.S1_a_at--275--10311Chr05:19635666..19635687 (22 bp)
TTTCAGGGTCCCAATTGCTAGGCTA
LOC_Os05g33570
Os.7144.2.S1_a_at--34--1591Chr05:19635636..19635660 (25 bp)
AGCTCAGGTGCTCCTCTGATGATGA
LOC_Os05g33570
Os.7144.2.S1_a_at--729--2971Chr05:19635535..19635559 (25 bp)
AATGGTGGAAACTCTGCTGCCTGTC
LOC_Os05g33570
Os.7144.2.S1_a_at--502--2951Chr05:19635509..19635533 (25 bp)
AAGGCGCCGTTGTATGTAGTATGCA
LOC_Os05g33570
Os.7144.2.S1_a_at--436--4991Chr05:19635487..19635511 (25 bp)
GCATGTTCGCATGTAAGCCTATGTG
LOC_Os05g33570
Os.7144.2.S1_a_at--1065--191Chr05:19635445..19635469 (25 bp)
ATTTCGCTTGAACTGCCATGGTAAT
LOC_Os05g33570
Target Sequence 
GCTGAGTTCTTCTCCTTTGGAACAAACGACCTAACACAGATGACATTTGGTTACAGTAGGGATGATGTGGGGAAGTTCCT
TCCCATCTATCTGTCTCAGGGTATCCTCCAGCATGACCCCTTTGAGGTGCTTGATCAGAGGGGAGTTGGGGAGCTGGTTA
AGCTGGCTACAGAGAGAGGCCGCAAAGCTAGGCCTAACTTGAAGGTGGGCATCTGTGGTGAACATGGTGGAGAGCCTCTG
TCAGTCGCTTTCTTTGCGAAGGCTGGGCTGGACTATGTTTCTTGTTCGCCTTTCAGGGTCCCAATTGCTAGGCTAGCTGC
AGCTCAGGTGCTCCTCTGATGATGACGCCCTTCTCTTTACCGGCAACCAGATCGCCTGCTGTTGGTGCACCTGGTGAAGA
ATAATAAATACATAGCCATGGAATGGTGGAAACTCTGCTGCCTGTCAAAGGCGCCGTTGTATGTAGTATGCATGTTCGCA
TGTAAGCCTATGTGGTGGTAGTTTTCTGAAAATTTCGCTTGAACTGCCATGGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7144.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis