Browse Element(s) Details


Os.12055.1.S1_at

Description gb:AK105210.1
DB_XREF= gi:32990419
TID=Os.12055.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-B03, full insert sequence.
FL= gb:AK105210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3355011/11methyl-binding domain protein MBD101, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33500Os.4917.1.S1_at11/115+19595043..19596957mitochondrial transcription termination factor family protein, putative, expressed
LOC_Os05g33510Os.5331.1.S1_at10/115+19598629..19601454expressed protein
LOC_Os05g33514Os.55269.1.S1_at9/115+19601640..19603680expressed protein
LOC_Os05g33520Os.49624.1.S1_at11/115+19608206..19611145expressed protein
LOC_Os05g33530OsAffx.14940.1.S1_x_at5/115+19614656..19615075hypothetical protein
LOC_Os05g33539NANA5+19616516..19616952NA
LOC_Os05g33550Os.12055.1.S1_at11/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33550OsAffx.27139.1.S1_at8/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33560NANA5+19631580..19632224hypothetical protein
LOC_Os05g33570Os.7144.2.S1_a_at11/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33570OsAffx.27140.1.S1_at9/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0008327molecular_functionmethyl-CpG binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12055.1.S1_at--655--10431Chr05:19619825..19619849 (25 bp)
TTATGCTTAGGTGATGCTCATCTCA
LOC_Os05g33550
Os.12055.1.S1_at--462--631Chr05:19619812..19619836 (25 bp)
ATGCTCATCTCAGGTTGTGGTGCTA
LOC_Os05g33550
Os.12055.1.S1_at--498--1011Chr05:19619801..19619825 (25 bp)
AGGTTGTGGTGCTACCCTCATCTAC
LOC_Os05g33550
Os.12055.1.S1_at--946--3751Chr05:19619785..19619809 (25 bp)
CTCATCTACTTTGTGGGCTGGTCAA
LOC_Os05g33550
Os.12055.1.S1_at--209--7491Chr05:19619773..19619797 (25 bp)
GTGGGCTGGTCAAATCTGTTTATAT
LOC_Os05g33550
Os.12055.1.S1_at--5--491Chr05:19619760..19619784 (25 bp)
ATCTGTTTATATTTGCACTTAGTCT
LOC_Os05g33550
Os.12055.1.S1_at--588--211Chr05:19619750..19619774 (25 bp)
ATTTGCACTTAGTCTGTTCGGTCTC
LOC_Os05g33550
Os.12055.1.S1_at--471--2051Chr05:19619744..19619768 (25 bp)
ACTTAGTCTGTTCGGTCTCTGTGAT
LOC_Os05g33550
Os.12055.1.S1_at--76--8811Chr05:19619736..19619760 (25 bp)
TGTTCGGTCTCTGTGATCTGTGTGT
LOC_Os05g33550
Os.12055.1.S1_at--744--471Chr05:19619721..19619745 (25 bp)
ATCTGTGTGTTATGATGCGCTGAAC
LOC_Os05g33550
Os.12055.1.S1_at--591--8851Chr05:19619709..19619733 (25 bp)
TGATGCGCTGAACCTTTTCTTTCTT
LOC_Os05g33550
Target Sequence 
TTATGCTTAGGTGATGCTCATCTCAGGTTGTGGTGCTACCCTCATCTACTTTGTGGGCTGGTCAAATCTGTTTATATTTG
CACTTAGTCTGTTCGGTCTCTGTGATCTGTGTGTTATGATGCGCTGAACCTTTTCTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis