Browse Element(s) Details


OsAffx.27140.1.S1_at

Description tigr:9633.m03094
TID=OsAffx.27140.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g335709/11Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33520Os.49624.1.S1_at11/115+19608206..19611145expressed protein
LOC_Os05g33530OsAffx.14940.1.S1_x_at5/115+19614656..19615075hypothetical protein
LOC_Os05g33539NANA5+19616516..19616952NA
LOC_Os05g33550Os.12055.1.S1_at11/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33550OsAffx.27139.1.S1_at8/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33560NANA5+19631580..19632224hypothetical protein
LOC_Os05g33570Os.7144.2.S1_a_at11/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33570OsAffx.27140.1.S1_at9/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33580Os.55404.1.S1_at6/115+19656771..19657448expressed protein
LOC_Os05g33590OsAffx.27141.1.S1_at11/115+19659153..19661654Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.57218.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.15851.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016310biological_processphosphorylation
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27140.1.S1_at--448--7491Chr05:19652719..19652743 (25 bp)
GTGGTGGCCTATGGGCTAGATCCCC
LOC_Os05g33570
OsAffx.27140.1.S1_at--56--5171Chr05:19652677..19652701 (25 bp)
GCAAGCTCGTGGCATGCTATCCGAT
LOC_Os05g33570
OsAffx.27140.1.S1_at--348--4812Chr12:26672342..26672449 (25 bp)
GCTCGTGGCATGCTATCCGATCAAA
NONE
OsAffx.27140.1.S1_at--55--3991Chr05:19652670..19652694 (25 bp)
CGTGGCATGCTATCCGATCAAAGGG
LOC_Os05g33570
OsAffx.27140.1.S1_at--826--4671Chr05:19652641..19652662 (22 bp)
GCGGTGGCCCCTTGTTCGGAGATCC
LOC_Os05g33570
OsAffx.27140.1.S1_at--97--8471NONE
TGGCCCCTTGTTCGGAGATCCCAGA
NONE
OsAffx.27140.1.S1_at--347--10791NONE
TTGTTCGGAGATCCCAGACTCCCAG
NONE
OsAffx.27140.1.S1_at--291--5291Chr05:19651618..19651642 (25 bp)
GAATGTGAACGGAATCGAGCCTGGA
LOC_Os05g33570
OsAffx.27140.1.S1_at--938--5451Chr05:19651612..19651636 (25 bp)
GAACGGAATCGAGCCTGGAATCCAT
LOC_Os05g33570
OsAffx.27140.1.S1_at--735--3911Chr05:19651611..19651633 (23 bp)
CGGAATCGAGCCTGGAATCCATGAG
LOC_Os05g33570
OsAffx.27140.1.S1_at--893--3031Chr05:19651349..19651618 (25 bp)
AATCCATGAGAGGTTCATTTCACTT
LOC_Os05g33570
Target Sequence 
GTGGTGGCCTATGGGCTAGATCCCCCTCCCCCCTTCCAAGCAGCAAGCTCGTGGCATGCTATCCGATCAAAGGGGAGCAA
GGCGGTGGCCCCTTGTTCGGAGATCCCAGACTCCCAGTACATCAAGAATGTGAACGGAATCGAGCCTGGAATCCATGAGA
GGTTCATTTCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis