Browse Element(s) Details


OsAffx.27139.1.S1_at

Description tigr:9633.m03091
TID=OsAffx.27139.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=methyl-binding domain protein MBD101
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g335508/11methyl-binding domain protein MBD101, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33500Os.4917.1.S1_at11/115+19595043..19596957mitochondrial transcription termination factor family protein, putative, expressed
LOC_Os05g33510Os.5331.1.S1_at10/115+19598629..19601454expressed protein
LOC_Os05g33514Os.55269.1.S1_at9/115+19601640..19603680expressed protein
LOC_Os05g33520Os.49624.1.S1_at11/115+19608206..19611145expressed protein
LOC_Os05g33530OsAffx.14940.1.S1_x_at5/115+19614656..19615075hypothetical protein
LOC_Os05g33539NANA5+19616516..19616952NA
LOC_Os05g33550Os.12055.1.S1_at11/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33550OsAffx.27139.1.S1_at8/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33560NANA5+19631580..19632224hypothetical protein
LOC_Os05g33570Os.7144.2.S1_a_at11/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed
LOC_Os05g33570OsAffx.27140.1.S1_at9/115+19635365..19654558Pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0008327molecular_functionmethyl-CpG binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27139.1.S1_at--412--10671Chr05:19622023..19622467 (25 bp)
TTCCAGCAGCAAGAAGCGTGTGTGT
NONE
OsAffx.27139.1.S1_at--464--2631Chr05:19621962..19621986 (25 bp)
AACCTCCAAGGTAGGTGCACACTGC
NONE
OsAffx.27139.1.S1_at--142--7351NONE
GTGCACACTGCACATCACCAGAAAA
NONE
OsAffx.27139.1.S1_at--975--851Chr05:19620288..19620312 (25 bp)
ATGGCGCAAGGTTCCGACGAAGGAT
LOC_Os05g33550
OsAffx.27139.1.S1_at--976--3111Chr05:19620242..19620266 (25 bp)
AATTTCACTGAGGAGCCATGGCACT
LOC_Os05g33550
OsAffx.27139.1.S1_at--38--5871Chr05:19620230..19620254 (25 bp)
GAGCCATGGCACTGCAGTAGAAGAC
LOC_Os05g33550
OsAffx.27139.1.S1_at--666--5831Chr05:19620208..19620232 (25 bp)
GACCTGACTGCTCGTGTGAAGACCC
LOC_Os05g33550
OsAffx.27139.1.S1_at--983--1971Chr05:19620202..19620226 (25 bp)
ACTGCTCGTGTGAAGACCCTGCTGA
LOC_Os05g33550
OsAffx.27139.1.S1_at--883--5811Chr05:19620188..19620212 (25 bp)
GACCCTGCTGACATCGAATATGATA
LOC_Os05g33550
OsAffx.27139.1.S1_at--1032--2651Chr05:19620140..19620164 (25 bp)
AAGCCTAACATACCAAAGCCTCCAG
LOC_Os05g33550
OsAffx.27139.1.S1_at--59--2372Chr09:10367173..10367197 (25 bp)
AAAGCCTCCAGCAGGAACTGAGAGA
NONE
Target Sequence 
TTCCAGCAGCAAGAAGCGTGTGTGTAAAATGAGAGTAAAGTTGGGAAAGTGTCCCGAACACAACCTCCAAGGTAGGTGCA
CACTGCACATCACCAGAAAACGAGGCTCCTCCACAGACTCCATTGGCATGTATGCAGTTCAATGTTGTGAGTGTCACAAA
TGGCGCAAGGTTCCGACGAAGGATGAATTTGAGACAATTCGTGAGAATTTCACTGAGGAGCCATGGCACTGCAGTAGAAG
ACCTGACTGCTCGTGTGAAGACCCTGCTGACATCGAATATGATAGCAGCCGTATATGGGTCCTTGACAAGCCTAACATAC
CAAAGCCTCCAGCAGGAACTGAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis