Browse Element(s) Details


Os.5331.1.S1_at

Description gb:AK071730.1
DB_XREF= gi:32981753
TID=Os.5331.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110A15, full insert sequence.
FL= gb:AK099324.1 gb:AK071730.1 gb:AK104169.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3351010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33460Os.23176.1.S1_at11/115+19575229..19576768mTERF family protein, expressed
LOC_Os05g33470NANA5+19578271..19581203hypothetical protein
LOC_Os05g33480NANA5+19584292..19587277retrotransposon protein, putative, unclassified
LOC_Os05g33490OsAffx.10596.1.S1_x_at1/115+19588029..19594222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33500Os.4917.1.S1_at11/115+19595043..19596957mitochondrial transcription termination factor family protein, putative, expressed
LOC_Os05g33510Os.5331.1.S1_at10/115+19598629..19601454expressed protein
LOC_Os05g33514Os.55269.1.S1_at9/115+19601640..19603680expressed protein
LOC_Os05g33520Os.49624.1.S1_at11/115+19608206..19611145expressed protein
LOC_Os05g33530OsAffx.14940.1.S1_x_at5/115+19614656..19615075hypothetical protein
LOC_Os05g33539NANA5+19616516..19616952NA
LOC_Os05g33550Os.12055.1.S1_at11/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed
LOC_Os05g33550OsAffx.27139.1.S1_at8/115+19619639..19621802methyl-binding domain protein MBD101, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5331.1.S1_at--1010--3211NONE
CAAGGGCACGGAGTATCCTGGAACA
NONE
Os.5331.1.S1_at--315--671Chr05:19600819..19600843 (25 bp)
ATGAATGTGCTGGATGCGGGACTCC
LOC_Os05g33510
Os.5331.1.S1_at--564--4671Chr05:19600834..19600858 (25 bp)
GCGGGACTCCATTGTACAAGTCATC
LOC_Os05g33510
Os.5331.1.S1_at--1099--7911Chr05:19600881..19600905 (25 bp)
GGTTGGCCAGCATTCTATGAAGGAT
LOC_Os05g33510
Os.5331.1.S1_at--565--1851Chr05:19600922..19601058 (25 bp)
ACGAACGCCTGATCCTGATGGCAGG
LOC_Os05g33510
Os.5331.1.S1_at--438--1771Chr05:19601071..19601095 (25 bp)
ACCTGTGCGGCTTGCGGAGGACATT
LOC_Os05g33510
Os.5331.1.S1_at--192--1831Chr05:19601128..19601152 (25 bp)
ACGCCTACAGATGAGCGGCATTGTG
LOC_Os05g33510
Os.5331.1.S1_at--948--4691Chr05:19601142..19601166 (25 bp)
GCGGCATTGTGTTAACAGTATCTCA
LOC_Os05g33510
Os.5331.1.S1_at--278--3451Chr05:19601157..19601181 (25 bp)
CAGTATCTCACTCAAGTTCATTCCA
LOC_Os05g33510
Os.5331.1.S1_at--829--6731Chr05:19601172..19601196 (25 bp)
GTTCATTCCAGCCTCAGAAGATAGT
LOC_Os05g33510
Os.5331.1.S1_at--1118--1171Chr05:19601381..19601405 (25 bp)
AGTTCTACTTTTTTCTGATAACCAG
LOC_Os05g33510
Target Sequence 
CAAGGGCACGGAGTATCCTGGAACAGGTGAATATGACAAGCTCTTCGCNTGAGGGTGTTTATGAATGTGCTGGATGCGGG
ACTCCATTGTACAAGTCATCTACTAAATTCAACTCAGGTTGTGGTTGGCCAGCATTCTATGAAGGATTTCCNGGAGCCAT
CGCACGAACGCCTGATCCTGATGGCAGGCGAATAGAGATCACCTGTGCGGCTTGCGGAGGACATTTAGGACATGTCTTCA
AAGGGGAGGGGTTCAACACGCCTACAGATGAGCGGCATTGTGTTAACAGTATCTCACTCAAGTTCATTCCAGCCTCAGAA
GATAGTAAGCTTTGAGCATGNAAGTATAAGCCNNCAATAGAACAGTCTGCGCAGTCANAGTAAACCTGTGATTATTANAA
AANAGTATCGGATTTTTCAGAAAGCAATTTNTACTCTGCNGTTTGTCAATAATGCGAAATACCAAGTCTGATGATTGTCG
AAAACTTTTGGCTGTAACCTATTTACACTTCCAGTTCTACTTTTTTCTGATAACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis